Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HPOK113_RS04090 Genome accession   NC_020508
Coordinates   858442..859962 (-) Length   506 a.a.
NCBI ID   WP_015427910.1    Uniprot ID   -
Organism   Helicobacter pylori OK113     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 853442..864962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOK113_RS04075 (HPOK113_0801) hofF 853997..855496 (+) 1500 WP_015427907.1 outer membrane beta-barrel protein HofF -
  HPOK113_RS04080 (HPOK113_0802) - 855726..856316 (-) 591 WP_015427908.1 restriction endonuclease subunit S -
  HPOK113_RS04085 (HPOK113_0803) - 856357..858417 (-) 2061 WP_015427909.1 heavy metal translocating P-type ATPase -
  HPOK113_RS04090 (HPOK113_0804) comM 858442..859962 (-) 1521 WP_015427910.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HPOK113_RS04095 (HPOK113_0805) def 859968..860492 (-) 525 WP_015427911.1 peptide deformylase -
  HPOK113_RS04100 (HPOK113_0806) clpP 860497..861084 (-) 588 WP_000540573.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  HPOK113_RS04105 (HPOK113_0807) tig 861107..862462 (-) 1356 WP_015427912.1 trigger factor -
  HPOK113_RS04110 (HPOK113_0808) - 862575..863411 (-) 837 WP_015427913.1 outer membrane protein -
  HPOK113_RS04115 (HPOK113_0809) hpaA 863436..864218 (-) 783 WP_015427914.1 flagellar sheath lipoprotein HpaA -
  HPOK113_RS04120 (HPOK113_0810) moaC 864337..864830 (-) 494 Protein_817 cyclic pyranopterin monophosphate synthase MoaC -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57176.20 Da        Isoelectric Point: 8.6896

>NTDB_id=46329 HPOK113_RS04090 WP_015427910.1 858442..859962(-) (comM) [Helicobacter pylori OK113]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANNSIQEAKQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNPNIFPMLLDIAIKHPHAKVIAPKANEELFSLIPNLQCFFVGHFKE
ALEILQNPETKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLKEPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYETSFLFVGAQNPCLCGNLLSSTKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
RNYKDTPSHSWTSKEMHQLVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNAEAKKLLEQAVERFNLSMRSINKVKKVAR
TIADLNACEDIEKTHVLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=46329 HPOK113_RS04090 WP_015427910.1 858442..859962(-) (comM) [Helicobacter pylori OK113]
ATGATTAACACGATATTTTGCGCGACCATGCAAAGGGGAGTGGCAGAAATCGTGGCCGTGGAGGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGCTTGGCTAATAACTCTATCCAAGAAGCCAAACAGCGGGTCCAGTCAGCCTTACAGA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCCCCTTCAGATTTGCCCAAATCCGGGAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAATCCTAACATTTTCCCCATGCTTTTAGACATTGCCATTAAACACCCCCATGCTAAAG
TCATTGCGCCTAAGGCGAATGAGGAGCTTTTTTCGCTTATCCCTAATTTGCAATGCTTTTTTGTGGGGCATTTTAAAGAA
GCTTTAGAAATCTTGCAAAACCCTGAAACCAAAGCAGACACCCATACGAAAAAACTACCCTTTAAAACGATAGAATTAAA
CGATAAAGAGTATTATTTTTCAGACGCCTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAGGCCG
CTTTGATCGCTAGCGCTGGGTTTCATAACTTGATTTTAGAGGGAAGTCCAGGGTGTGGGAAAAGCATGATCATTAACCGC
ATGCGTTATATCTTGCCTCCATTAAGCCTGAATGAAATCCTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCTTTAAGGAGTTTTAGAAACCCTCACCAAAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTTTAA
AAGAGCCAAAACCTGGCGAAATCGCGTTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCCCATTTTAAAAAGGAT
ATTTTGGAAGCTTTAAGAGAGCCTTTAGAAAACAATAAATTGGTGATCTCACGAGTGCATAGCAAGATTGAATACGAAAC
CTCCTTTTTATTTGTAGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGCTCAACCAAAGCATGCCGTTGCCAAG
ATAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTGGACAGGATTGATTTGTTTGTGCAAATGGAAGAG
AGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATCAATTGGTATTATTAGCTTTCAAACAGCA
AAAGTTAAGGAAACAGAGCGCTTTTAATGGTAAGCTTAATGAAGAGCAGATAGAGAGATTTTGCCCTTTAAACGCTGAAG
CAAAAAAGTTGTTAGAACAGGCGGTTGAAAGGTTTAATCTGTCCATGCGCTCTATTAATAAGGTCAAAAAGGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGGATATAGAAAAAACTCATGTGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-404)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

97.826

100

0.978
  comM Acinetobacter baylyi ADP1

36.204

100

0.366