Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HPOK113_RS02705 Genome accession   NC_020508
Coordinates   555603..555866 (-) Length   87 a.a.
NCBI ID   WP_001177715.1    Uniprot ID   -
Organism   Helicobacter pylori OK113     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 550603..560866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOK113_RS02695 (HPOK113_0529) - 553623..555356 (-) 1734 Protein_531 FtsK/SpoIIIE domain-containing protein -
  HPOK113_RS02700 (HPOK113_0530) - 555356..555592 (-) 237 WP_001183709.1 hypothetical protein -
  HPOK113_RS02705 (HPOK113_0531) comB3 555603..555866 (-) 264 WP_001177715.1 hypothetical protein Machinery gene
  HPOK113_RS02710 (HPOK113_0532) comB2 555877..556161 (-) 285 WP_000736106.1 TrbC/VirB2 family protein Machinery gene
  HPOK113_RS02715 (HPOK113_0533) - 556158..556637 (-) 480 WP_015427696.1 hypothetical protein -
  HPOK113_RS02720 (HPOK113_0534) - 556741..557529 (-) 789 WP_015427697.1 hypothetical protein -
  HPOK113_RS02725 (HPOK113_0535) - 557643..559166 (+) 1524 WP_015427698.1 DUF262 and DUF1524 domain-containing protein -
  HPOK113_RS02730 (HPOK113_0536) rplI 559229..559678 (+) 450 WP_015427699.1 50S ribosomal protein L9 -
  HPOK113_RS02735 (HPOK113_0537) hslV 559682..560224 (+) 543 WP_000461054.1 ATP-dependent protease subunit HslV -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 9988.86 Da        Isoelectric Point: 5.7206

>NTDB_id=46323 HPOK113_RS02705 WP_001177715.1 555603..555866(-) (comB3) [Helicobacter pylori OK113]
MQLVGISVSNLKEISSKEKFLWLNAKSFLIAGFVPFVMIPWLDFLNSLMLYVCFLLVFSIAEFFDEDISDILIAHSKIKT
KTNSFYA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=46323 HPOK113_RS02705 WP_001177715.1 555603..555866(-) (comB3) [Helicobacter pylori OK113]
ATGCAATTAGTCGGCATTTCAGTTTCTAATCTCAAAGAAATCAGTTCTAAAGAAAAGTTTCTTTGGCTCAATGCTAAGAG
CTTTTTAATCGCAGGATTTGTGCCTTTTGTAATGATACCTTGGCTAGATTTTTTAAATTCTTTAATGCTGTATGTGTGCT
TTTTATTGGTTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGCGACATTTTAATCGCCCATTCTAAGATTAAAACC
AAAACTAATTCATTTTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

59.77

100

0.598

Multiple sequence alignment