Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   HW369_RS09935 Genome accession   NZ_CP058255
Coordinates   1879772..1880194 (-) Length   140 a.a.
NCBI ID   WP_195696478.1    Uniprot ID   -
Organism   Priestia megaterium strain BHS1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1874772..1885194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HW369_RS09905 - 1875075..1875491 (+) 417 WP_195696474.1 hypothetical protein -
  HW369_RS09910 - 1875845..1876201 (+) 357 WP_244658440.1 hypothetical protein -
  HW369_RS09915 - 1876531..1877811 (+) 1281 WP_244658441.1 glycosyltransferase -
  HW369_RS09920 - 1877835..1878491 (+) 657 WP_195696475.1 TetR/AcrR family transcriptional regulator -
  HW369_RS09925 - 1878644..1879237 (+) 594 WP_195696476.1 hypothetical protein -
  HW369_RS09930 - 1879278..1879622 (-) 345 WP_195696477.1 DUF1516 family protein -
  HW369_RS09935 nucA/comI 1879772..1880194 (-) 423 WP_195696478.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  HW369_RS09940 - 1880335..1880799 (-) 465 WP_195696479.1 FixH family protein -
  HW369_RS09945 - 1880829..1882211 (-) 1383 WP_195696480.1 PepSY domain-containing protein -
  HW369_RS09950 - 1882365..1883357 (-) 993 WP_195696481.1 glycerophosphodiester phosphodiesterase family protein -
  HW369_RS09955 - 1883532..1884173 (-) 642 WP_195696482.1 response regulator transcription factor -
  HW369_RS09960 - 1884174..1884995 (-) 822 WP_195696483.1 histidine kinase -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15388.25 Da        Isoelectric Point: 4.6005

>NTDB_id=463131 HW369_RS09935 WP_195696478.1 1879772..1880194(-) (nucA/comI) [Priestia megaterium strain BHS1]
MKKIVSGILILVLAVIVMIEGNPLEQNSSTNTSYDEVITFPADRYPETAAHIQHAIDKGKSAVCTIDRDGAEENRRESLK
GIPTKRGYDRDEFPMAFCEEGGSGADIEYVKPSDNRGAGSWISHQVDEFSDGTKVLIEVK

Nucleotide


Download         Length: 423 bp        

>NTDB_id=463131 HW369_RS09935 WP_195696478.1 1879772..1880194(-) (nucA/comI) [Priestia megaterium strain BHS1]
TTGAAAAAAATTGTTTCTGGTATTTTAATTTTAGTATTAGCCGTTATTGTTATGATTGAAGGAAATCCGTTAGAGCAGAA
CTCTTCAACGAATACCTCCTACGATGAAGTAATTACCTTCCCTGCTGATCGTTACCCTGAAACTGCAGCCCACATTCAAC
ATGCAATCGATAAAGGAAAATCGGCTGTTTGTACAATTGACCGAGACGGGGCTGAGGAAAACCGCCGTGAGTCTTTAAAA
GGCATTCCGACTAAAAGAGGCTATGACCGAGATGAGTTTCCGATGGCCTTTTGTGAAGAAGGCGGAAGCGGTGCCGATAT
TGAATATGTAAAGCCTTCAGACAACCGAGGCGCCGGGTCTTGGATCTCCCATCAAGTAGACGAGTTTTCTGACGGTACGA
AGGTTTTAATTGAAGTGAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(43-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

60.345

82.857

0.5