Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   HW369_RS04260 Genome accession   NZ_CP058255
Coordinates   817725..819452 (+) Length   575 a.a.
NCBI ID   WP_153254563.1    Uniprot ID   -
Organism   Priestia megaterium strain BHS1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 812725..824452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HW369_RS04235 - 812922..813155 (+) 234 WP_013059140.1 exodeoxyribonuclease VII small subunit -
  HW369_RS04240 - 813155..814051 (+) 897 WP_195695912.1 polyprenyl synthetase family protein -
  HW369_RS04245 dxs 814372..816273 (+) 1902 WP_028410662.1 1-deoxy-D-xylulose-5-phosphate synthase -
  HW369_RS04250 - 816270..817097 (+) 828 WP_014458249.1 TlyA family RNA methyltransferase -
  HW369_RS04255 argR 817259..817708 (+) 450 WP_013059136.1 transcriptional regulator ArgR -
  HW369_RS04260 recN 817725..819452 (+) 1728 WP_153254563.1 DNA repair protein RecN Machinery gene
  HW369_RS04265 spoIVB 819635..820915 (+) 1281 WP_195695913.1 SpoIVB peptidase -
  HW369_RS04270 spo0A 821143..821931 (+) 789 WP_013084985.1 sporulation transcription factor Spo0A -
  HW369_RS04275 - 822328..823659 (-) 1332 WP_195695914.1 peptide MFS transporter -
  HW369_RS04280 - 823972..824124 (-) 153 WP_013059130.1 YycC family protein -

Sequence

Protein


Download         Length: 575 a.a.        Molecular weight: 64720.25 Da        Isoelectric Point: 4.8309

>NTDB_id=463124 HW369_RS04260 WP_153254563.1 817725..819452(+) (recN) [Priestia megaterium strain BHS1]
MLAELSIKNFAIIDELSVSFEKGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRHGTDRAEIEGLFLFDEEQHPSHEK
AKQVGLEVEDGMIVLRRDITTNGKSICRINGKLVTLAILREVGQTLIDIHGQHEHQDLMNQDRHLTLLDQYGGEKVEEAL
TEYREVFSRYTSLKKQLDQLTENEQQMAHRLDLIQFQLDEIKAANLQLNEDEELNEERLKISNFEKIYTSLNDAYNALHG
EHQGLDWVGVAMNHTEDISSLEKNYAEISEIISSSFYQLEDASYKIRQQLDLLEFDPKRLDFIEARLNEINHLKRKYGQS
VDEILEYAAQIEDEIDRIENRDTHVSKIKEQLNSVAQDLLVEANNVSAIRRKLAQELTDSIHHELQELYMAKTVFQIKFS
VVNAGKNDVEVNGERIKFTKDGIDNVEFYISTNPGEPLKPLAKVASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVS
GRVAQSIGEKIHAISVDSQVLCISHLPQVAAMADTHLFIAKEIKGDRTTTSVLPLTLDEKVKEIGRMIAGAEITSLTKEH
AKELLDLADKMKHTI

Nucleotide


Download         Length: 1728 bp        

>NTDB_id=463124 HW369_RS04260 WP_153254563.1 817725..819452(+) (recN) [Priestia megaterium strain BHS1]
TTGTTAGCTGAATTATCCATTAAAAACTTTGCGATTATTGATGAACTTTCTGTTTCATTTGAAAAAGGCTTAACGGTATT
AACAGGCGAAACAGGAGCGGGGAAATCGATTATTATTGATGCCATTTCATTGTTAGTAGGTGGAAGAGGCTCTTCGGAGT
TTGTCCGCCACGGAACAGACAGGGCCGAAATTGAAGGACTTTTCTTATTTGATGAAGAACAGCATCCAAGTCATGAAAAA
GCTAAACAAGTCGGTTTAGAAGTGGAAGATGGAATGATTGTGCTTCGCCGAGATATCACTACAAATGGGAAAAGTATTTG
CCGGATCAACGGTAAGCTCGTAACGTTAGCTATCCTACGTGAAGTTGGACAGACTTTAATTGATATACATGGACAGCACG
AGCACCAAGATTTAATGAACCAAGATCGTCACTTAACTCTTCTTGATCAATATGGAGGAGAAAAAGTAGAAGAGGCTTTG
ACGGAGTATCGTGAGGTATTTTCTAGGTATACATCGCTAAAAAAGCAGCTCGATCAATTAACTGAAAATGAACAGCAGAT
GGCACATCGCCTCGATCTTATTCAATTTCAATTAGATGAAATCAAAGCGGCAAATTTGCAGCTGAACGAAGACGAGGAAC
TAAATGAAGAGCGTTTGAAGATTTCTAACTTTGAAAAGATCTATACGTCACTAAACGATGCGTACAATGCGCTGCACGGT
GAACATCAAGGTTTAGATTGGGTAGGCGTAGCCATGAATCATACGGAGGATATTTCGTCACTGGAAAAAAACTATGCCGA
AATTTCTGAGATCATTTCATCGAGCTTCTATCAGCTAGAAGACGCATCTTATAAAATTCGTCAGCAGCTTGATTTATTAG
AATTTGATCCTAAACGCTTAGACTTTATTGAAGCGCGTTTAAATGAAATTAATCACTTAAAGCGTAAATACGGTCAAAGT
GTAGACGAAATTCTAGAATATGCAGCGCAAATTGAAGATGAAATTGATCGTATTGAAAATCGAGATACGCATGTGAGCAA
GATCAAAGAACAGTTAAACAGCGTAGCGCAGGATTTATTAGTAGAAGCTAATAACGTTTCAGCTATTCGAAGAAAACTTG
CTCAAGAATTAACGGACAGCATCCATCATGAGCTTCAAGAACTGTATATGGCTAAGACCGTATTTCAAATTAAATTCTCT
GTTGTAAATGCAGGTAAAAATGACGTTGAAGTAAATGGAGAAAGAATAAAATTCACCAAAGACGGCATTGACAACGTAGA
ATTTTATATTTCTACCAATCCTGGTGAACCGTTAAAACCTCTTGCAAAAGTAGCATCAGGAGGAGAACTGTCAAGAATTA
TGCTGGCGTTAAAGAGCATCTTCTCTAAGCATCAAGGCGTGACGTCCATTATCTTTGATGAAGTTGATACAGGCGTAAGT
GGAAGAGTAGCTCAATCGATTGGTGAAAAAATACATGCTATTTCCGTTGATTCACAAGTTCTCTGTATATCTCATCTGCC
GCAGGTAGCAGCTATGGCAGATACTCATCTCTTTATTGCTAAAGAGATAAAAGGTGATCGTACAACGACGTCTGTTCTTC
CATTAACTCTTGATGAAAAAGTAAAAGAAATTGGTCGAATGATTGCAGGAGCTGAAATTACAAGCTTAACAAAGGAACAT
GCCAAAGAGCTTTTAGATTTAGCGGATAAGATGAAGCACACCATTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

64.757

100

0.649