Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ED5_RS07495 Genome accession   NZ_CP058253
Coordinates   1610463..1611089 (+) Length   208 a.a.
NCBI ID   WP_021240856.1    Uniprot ID   A0AB35EUS1
Organism   Enterobacter roggenkampii strain ED5     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1605463..1616089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ED5_RS07475 (ED5_1509) - 1605861..1607621 (-) 1761 WP_023343697.1 Lon protease family protein -
  ED5_RS07480 (ED5_1511) matP 1607808..1608260 (+) 453 WP_008499929.1 macrodomain Ter protein MatP -
  ED5_RS07485 (ED5_1512) ompA 1608326..1609381 (-) 1056 WP_008499928.1 porin OmpA -
  ED5_RS07490 (ED5_1514) sulA 1609736..1610245 (-) 510 WP_023618859.1 SOS-induced cell division inhibitor SulA -
  ED5_RS07495 (ED5_1515) sxy/tfoX 1610463..1611089 (+) 627 WP_021240856.1 TfoX/Sxy family DNA transformation protein Regulator
  ED5_RS07500 (ED5_1516) yccS 1611046..1613208 (-) 2163 WP_021240855.1 YccS family putative transporter -
  ED5_RS07505 (ED5_1517) - 1613228..1613674 (-) 447 WP_023335159.1 YccF domain-containing protein -
  ED5_RS07510 (ED5_1518) helD 1613798..1615852 (+) 2055 WP_047071934.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23914.49 Da        Isoelectric Point: 9.6030

>NTDB_id=463086 ED5_RS07495 WP_021240856.1 1610463..1611089(+) (sxy/tfoX) [Enterobacter roggenkampii strain ED5]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALSAARKERYQRHQRNRLKDLPNLTFQLEVLLYEAGITNEETLRALGARASWLKMRAKN
KALSIKVLFALEGAIEGLHEAALPAGIRRELTEWFNALPEPQESRSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=463086 ED5_RS07495 WP_021240856.1 1610463..1611089(+) (sxy/tfoX) [Enterobacter roggenkampii strain ED5]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTCTCTCCGTTGGGCGAGATTCATCATCGCGCGCT
GTTTGGCGGTTACACCCTGGCAGTGGATGATGCGGTCTTTGCCATGGTGTCCGATGGCGAACTTTACCTTCGCGCGTGTG
AAGAGAGTGCAAAATACTGTGTAAAAAATGCTTCCTCCTTCTTGACGTTGATGAAGCGAGGCCGCCCGGTACTGCTCAAC
TATTATCGTGTGGATGACGGATTATGGCAGGACAGGGAGCGGTTGCTTCAGCTCTCCTCGTTTGCACTCAGTGCGGCAAG
GAAAGAGCGCTACCAGCGTCATCAACGAAACCGTCTTAAGGATCTGCCGAACCTGACCTTTCAGCTTGAAGTCTTGCTCT
ATGAAGCCGGTATCACCAATGAAGAAACGCTGCGGGCGCTGGGCGCCAGAGCGAGCTGGCTGAAGATGCGGGCAAAGAAT
AAAGCACTCAGTATAAAAGTGCTCTTTGCGCTGGAAGGGGCAATCGAAGGGCTGCATGAGGCGGCACTCCCGGCAGGTAT
CCGCCGGGAACTGACGGAGTGGTTTAATGCGCTGCCTGAGCCGCAGGAGAGTCGTTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567