Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   HWU18_RS07160 Genome accession   NZ_CP058252
Coordinates   1492825..1493400 (-) Length   191 a.a.
NCBI ID   WP_237004278.1    Uniprot ID   -
Organism   Helicobacter pylori strain NP05-124     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1487825..1498400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWU18_RS07940 - 1489511..1490101 (-) 591 WP_336885816.1 restriction endonuclease subunit S -
  HWU18_RS07945 - 1490118..1490756 (-) 639 WP_336885817.1 restriction endonuclease subunit S -
  HWU18_RS07155 - 1490753..1492792 (-) 2040 WP_237004277.1 HsdM family class I SAM-dependent methyltransferase -
  HWU18_RS07160 comFC 1492825..1493400 (-) 576 WP_237004278.1 ComF family protein Machinery gene
  HWU18_RS07165 tmk 1493388..1493963 (-) 576 WP_237004279.1 dTMP kinase -
  HWU18_RS07170 coaD 1493965..1494438 (-) 474 WP_031245748.1 pantetheine-phosphate adenylyltransferase -
  HWU18_RS07175 - 1494438..1495001 (-) 564 WP_000780121.1 UbiX family flavin prenyltransferase -
  HWU18_RS07180 flgA 1495011..1495667 (-) 657 WP_237004280.1 flagellar basal body P-ring formation chaperone FlgA -
  HWU18_RS07185 uvrD 1495664..1497709 (-) 2046 WP_237004281.1 DNA helicase UvrD -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21336.91 Da        Isoelectric Point: 8.7510

>NTDB_id=463080 HWU18_RS07160 WP_237004278.1 1492825..1493400(-) (comFC) [Helicobacter pylori strain NP05-124]
MRCLTCLKLSFKPLCPNCLNDLPLNLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGKEFVRILQEQG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGCLRANNAVSYAGKSLEFRANNPRNFTFKGDESLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=463080 HWU18_RS07160 WP_237004278.1 1492825..1493400(-) (comFC) [Helicobacter pylori strain NP05-124]
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTCCAAATTGCTTGAACGATTTGCCCTTAAATTTAAA
GGTGAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCAAAGAATTTGTGAGAATCTTACAAGAACAAGGT
TTGAATATTCCCCTTTATGGCATCGCCATTGACGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAAGCCACTTACGGGTGTTTAAGGGCTAATAATGCTGTTTCGTATGCGGGGAAAAGCTTAG
AATTTCGTGCCAACAACCCACGGAATTTCACCTTCAAAGGTGATGAGAGTTTAGATTATTTTTTACTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACTCTAAACATAAAAGCACACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

96.859

100

0.969