Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HWU18_RS03605 Genome accession   NZ_CP058252
Coordinates   767417..767821 (-) Length   134 a.a.
NCBI ID   WP_050852864.1    Uniprot ID   -
Organism   Helicobacter pylori strain NP05-124     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 762417..772821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWU18_RS03580 recJ 762795..764345 (+) 1551 WP_237004725.1 single-stranded-DNA-specific exonuclease RecJ -
  HWU18_RS03585 - 764345..765226 (+) 882 WP_237004726.1 RluA family pseudouridine synthase -
  HWU18_RS03590 - 765328..765888 (-) 561 WP_025275694.1 hypothetical protein -
  HWU18_RS03595 - 765872..766210 (-) 339 WP_025275693.1 hypothetical protein -
  HWU18_RS03600 - 766395..767285 (-) 891 WP_120916402.1 SEL1-like repeat protein -
  HWU18_RS03605 dprB 767417..767821 (-) 405 WP_050852864.1 Holliday junction resolvase RuvX Machinery gene
  HWU18_RS03610 dprA 767818..768618 (-) 801 WP_237004727.1 DNA-processing protein DprA Machinery gene
  HWU18_RS03615 minE 768630..768863 (-) 234 WP_000051430.1 cell division topological specificity factor MinE -
  HWU18_RS03620 minD 768860..769666 (-) 807 WP_024368957.1 septum site-determining protein MinD -
  HWU18_RS03625 ilvC 769690..770682 (-) 993 WP_237004728.1 ketol-acid reductoisomerase -
  HWU18_RS03635 - 770931..771713 (+) 783 WP_237004729.1 NAD+ synthase -
  HWU18_RS03640 - 771710..772648 (+) 939 WP_120874529.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15151.57 Da        Isoelectric Point: 8.1426

>NTDB_id=463073 HWU18_RS03605 WP_050852864.1 767417..767821(-) (dprB) [Helicobacter pylori strain NP05-124]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLVDFKGE
IVFINEDNSSVEAYDNLEHLGRKNKRLAIKDGRLDSLSACRILECYCQQVLKKH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=463073 HWU18_RS03605 WP_050852864.1 767417..767821(-) (dprB) [Helicobacter pylori strain NP05-124]
ATGATTTTAGCGTGCGATGTGGGGTTAAAACGCATTGGCATTGCTGCACTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGAAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTAGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCCCGCATTGAGCATTTTATCAAACTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGATAATTCTAGCGTAGAAGCTTATGACAATTTAGAGCATTTGGGTAGGAAAAACAAGCGGCT
CGCTATCAAAGACGGCCGGCTAGATTCTTTGAGCGCTTGTAGGATTTTAGAGTGCTATTGCCAGCAGGTTTTAAAAAAGC
ATTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.03

100

0.94