Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   HWU19_RS07205 Genome accession   NZ_CP058251
Coordinates   1511261..1511836 (-) Length   191 a.a.
NCBI ID   WP_237016442.1    Uniprot ID   -
Organism   Helicobacter pylori strain UBN18     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1506261..1516836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWU19_RS07965 - 1507946..1508497 (-) 552 WP_336886148.1 N-6 DNA methylase -
  HWU19_RS07970 - 1508536..1509192 (-) 657 WP_336886149.1 restriction endonuclease subunit S -
  HWU19_RS07200 - 1509189..1511228 (-) 2040 WP_237016441.1 HsdM family class I SAM-dependent methyltransferase -
  HWU19_RS07205 comFC 1511261..1511836 (-) 576 WP_237016442.1 ComF family protein Machinery gene
  HWU19_RS07210 tmk 1511824..1512399 (-) 576 WP_237016443.1 dTMP kinase -
  HWU19_RS07215 coaD 1512401..1512874 (-) 474 WP_237016444.1 pantetheine-phosphate adenylyltransferase -
  HWU19_RS07220 - 1512874..1513437 (-) 564 WP_180410468.1 UbiX family flavin prenyltransferase -
  HWU19_RS07225 flgA 1513447..1514103 (-) 657 WP_237016446.1 flagellar basal body P-ring formation chaperone FlgA -
  HWU19_RS07230 uvrD 1514100..1516145 (-) 2046 WP_237016447.1 DNA helicase UvrD -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21318.91 Da        Isoelectric Point: 8.8864

>NTDB_id=463060 HWU19_RS07205 WP_237016442.1 1511261..1511836(-) (comFC) [Helicobacter pylori strain UBN18]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRAINAVSYAGKSLEFRTNNPRDFTFKGDENLDYFLLDDII
TTGTTIKEALKYLKALNIKAHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=463060 HWU19_RS07205 WP_237016442.1 1511261..1511836(-) (comFC) [Helicobacter pylori strain UBN18]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTCAAACCTCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTATATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTACCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGAACACTCCCCTTTATGGCATCGCCATTGACGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGCCAAGGCAATTTAAAACCCACTTACGGGCGTTTAAGGGCTATTAACGCTGTTTCGTATGCTGGGAAAAGCCTGG
AATTTCGCACCAACAACCCACGGGATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTCTTGCTAGATGATATTATC
ACCACCGGCACCACCATAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATCAAAGCCCACTTTGCGATTGCTCTTTG
CAGCGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

95.288

100

0.953