Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HWU19_RS01635 Genome accession   NZ_CP058251
Coordinates   341916..342320 (+) Length   134 a.a.
NCBI ID   WP_237016739.1    Uniprot ID   -
Organism   Helicobacter pylori strain UBN18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 336916..347320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWU19_RS01600 - 337094..338032 (-) 939 WP_237016734.1 tetraacyldisaccharide 4'-kinase -
  HWU19_RS01605 - 338029..338811 (-) 783 WP_237016735.1 NAD+ synthase -
  HWU19_RS01615 ilvC 339060..340052 (+) 993 WP_237016736.1 ketol-acid reductoisomerase -
  HWU19_RS01620 minD 340076..340882 (+) 807 WP_237016737.1 septum site-determining protein MinD -
  HWU19_RS01625 minE 340879..341112 (+) 234 WP_000051430.1 cell division topological specificity factor MinE -
  HWU19_RS01630 dprA 341119..341919 (+) 801 WP_237016738.1 DNA-processing protein DprA Machinery gene
  HWU19_RS01635 dprB 341916..342320 (+) 405 WP_237016739.1 Holliday junction resolvase RuvX Machinery gene
  HWU19_RS01640 - 342603..343340 (+) 738 WP_237017044.1 tetratricopeptide repeat protein -
  HWU19_RS01645 - 343467..343772 (+) 306 WP_100975247.1 hypothetical protein -
  HWU19_RS01650 - 343756..344322 (+) 567 WP_140521902.1 hypothetical protein -
  HWU19_RS01655 - 344319..344480 (+) 162 WP_153227343.1 lysozyme -
  HWU19_RS01660 - 344584..345009 (+) 426 WP_237016740.1 hypothetical protein -
  HWU19_RS01665 - 345302..345683 (+) 382 Protein_326 DUF1294 domain-containing protein -
  HWU19_RS01670 - 345683..346468 (+) 786 WP_140573603.1 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15278.79 Da        Isoelectric Point: 9.8540

>NTDB_id=463050 HWU19_RS01635 WP_237016739.1 341916..342320(+) (dprB) [Helicobacter pylori strain UBN18]
MILACDVGLKRIGIAALLNGVILPLEAILRRNKNQASRDLSDLLREKNIQVLVVGKPNKSYADTNARIEHFIKLVDFKGE
IVFINEDRSSIEAYENLEHLGRKNRRLAIKDGRLDSLSACRILERYCQQVLKNH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=463050 HWU19_RS01635 WP_237016739.1 341916..342320(+) (dprB) [Helicobacter pylori strain UBN18]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATTGCTGCGCTTTTAAACGGCGTTATCTTGCCCTTAGAAGC
GATTTTGCGCCGCAACAAAAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAGGTGCTAGTGG
TGGGCAAGCCCAATAAAAGCTATGCGGATACGAACGCGCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAGGAAAAACAGGCGGCT
CGCTATCAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGCAGGATTTTAGAACGCTATTGCCAGCAGGTTTTAAAAAATC
ATTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.776

100

0.948