Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HWU19_RS00090 Genome accession   NZ_CP058251
Coordinates   13687..13950 (+) Length   87 a.a.
NCBI ID   WP_000584973.1    Uniprot ID   G2MDJ4
Organism   Helicobacter pylori strain UBN18     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8687..18950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWU19_RS00065 groES 8967..9323 (-) 357 WP_015643481.1 co-chaperone GroES -
  HWU19_RS00070 dnaG 9614..11293 (+) 1680 WP_237016544.1 DNA primase -
  HWU19_RS00075 - 11290..12342 (+) 1053 WP_237016545.1 MnmA/TRMU family protein -
  HWU19_RS00080 - 12433..13260 (+) 828 WP_237016546.1 DUF5718 family protein -
  HWU19_RS00085 comB2 13406..13687 (+) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  HWU19_RS00090 comB3 13687..13950 (+) 264 WP_000584973.1 hypothetical protein Machinery gene
  HWU19_RS00095 comB4 13952..16315 (+) 2364 WP_237016547.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HWU19_RS00105 - 16617..17957 (+) 1341 WP_237016548.1 COG3014 family protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10034.13 Da        Isoelectric Point: 9.5290

>NTDB_id=463040 HWU19_RS00090 WP_000584973.1 13687..13950(+) (comB3) [Helicobacter pylori strain UBN18]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFVPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=463040 HWU19_RS00090 WP_000584973.1 13687..13950(+) (comB3) [Helicobacter pylori strain UBN18]
ATGATTATCCTCTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCAGTTAAAGAAAAATTTTTATGGCTGAACGCTAAATC
TTATTTGATTTCTGTTTTTGTGCCTTTTATTTTGCTCCCTTGGATTGATTTATTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGACATTGCAGATATTATTGTGGCTAAAAGCAAAATAAAGACC
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

98.851

100

0.989