Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   JNN41_RS12090 Genome accession   NZ_CP068820
Coordinates   2492747..2493223 (-) Length   158 a.a.
NCBI ID   WP_001186726.1    Uniprot ID   -
Organism   Escherichia coli strain RIVM_C029951     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2487747..2498223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNN41_RS12060 (JNN41_12060) yjhU 2489307..2490293 (+) 987 WP_001550553.1 sugar-binding transcriptional regulator -
  JNN41_RS12065 (JNN41_12065) - 2490334..2491338 (-) 1005 WP_001519297.1 GRP family sugar transporter -
  JNN41_RS12070 (JNN41_12070) - 2491442..2491744 (-) 303 WP_019843007.1 class II aldolase/adducin family protein -
  JNN41_RS12075 (JNN41_12075) - 2491752..2491836 (-) 85 Protein_2400 TA system toxin CbtA family protein -
  JNN41_RS12080 (JNN41_12080) - 2491926..2492294 (-) 369 WP_001550550.1 type IV toxin-antitoxin system YeeU family antitoxin -
  JNN41_RS12085 (JNN41_12085) - 2492457..2492678 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  JNN41_RS12090 (JNN41_12090) radC 2492747..2493223 (-) 477 WP_001186726.1 RadC family protein Machinery gene
  JNN41_RS12095 (JNN41_12095) - 2493239..2493718 (-) 480 WP_001550549.1 antirestriction protein -
  JNN41_RS12100 (JNN41_12100) - 2493800..2494621 (-) 822 WP_001551997.1 DUF932 domain-containing protein -
  JNN41_RS12105 (JNN41_12105) - 2494722..2494907 (-) 186 WP_001550547.1 DUF905 family protein -
  JNN41_RS12110 (JNN41_12110) - 2494978..2497824 (-) 2847 WP_023910065.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17673.32 Da        Isoelectric Point: 7.2020

>NTDB_id=463039 JNN41_RS12090 WP_001186726.1 2492747..2493223(-) (radC) [Escherichia coli strain RIVM_C029951]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=463039 JNN41_RS12090 WP_001186726.1 2492747..2493223(-) (radC) [Escherichia coli strain RIVM_C029951]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCGGAACACGGCCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392