Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HWI84_RS01610 Genome accession   NZ_CP058250
Coordinates   333587..333991 (+) Length   134 a.a.
NCBI ID   WP_237013320.1    Uniprot ID   -
Organism   Helicobacter pylori strain AL02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 328587..338991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWI84_RS01575 - 328760..329698 (-) 939 WP_237013315.1 tetraacyldisaccharide 4'-kinase -
  HWI84_RS01580 - 329695..330477 (-) 783 WP_237013316.1 NAD+ synthase -
  HWI84_RS01590 ilvC 330726..331718 (+) 993 WP_237013317.1 ketol-acid reductoisomerase -
  HWI84_RS01595 minD 331742..332548 (+) 807 WP_237013318.1 septum site-determining protein MinD -
  HWI84_RS01600 minE 332545..332778 (+) 234 WP_000051428.1 cell division topological specificity factor MinE -
  HWI84_RS01605 dprA 332790..333590 (+) 801 WP_237013319.1 DNA-processing protein DprA Machinery gene
  HWI84_RS01610 dprB 333587..333991 (+) 405 WP_237013320.1 Holliday junction resolvase RuvX Machinery gene
  HWI84_RS07695 - 334048..334995 (+) 948 Protein_314 hypothetical protein -
  HWI84_RS07700 - 335035..336051 (+) 1017 Protein_315 tetratricopeptide repeat protein -
  HWI84_RS01625 - 336191..336853 (+) 663 WP_237013321.1 tetratricopeptide repeat protein -
  HWI84_RS01630 - 336972..337310 (+) 339 WP_000699916.1 hypothetical protein -
  HWI84_RS01635 - 337294..337854 (+) 561 WP_237013322.1 hypothetical protein -
  HWI84_RS01640 - 337883..338545 (+) 663 WP_336885778.1 glycoside hydrolase family protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15328.86 Da        Isoelectric Point: 8.7158

>NTDB_id=463030 HWI84_RS01610 WP_237013320.1 333587..333991(+) (dprB) [Helicobacter pylori strain AL02]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNKNQASRDLSDLLREKNIQVLVVGKPNESYTDTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKDR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=463030 HWI84_RS01610 WP_237013320.1 333587..333991(+) (dprB) [Helicobacter pylori strain AL02]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTATGCTTTTAAACGGCGTTATTTTGCCTTTAGAAGC
GATTTTACGCCACAACAAAAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATACGGACACGAACGCGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGTAGGATCTTGGAGCGCTATTGCCAACAGGTTTTGAAAGATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.737

99.254

0.94