Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   JNN41_RS00525 Genome accession   NZ_CP068820
Coordinates   109422..110846 (-) Length   474 a.a.
NCBI ID   WP_114213092.1    Uniprot ID   -
Organism   Escherichia coli strain RIVM_C029951     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 104422..115846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNN41_RS00495 (JNN41_00495) yeeZ 104477..105301 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  JNN41_RS00500 (JNN41_00500) yeeY 105347..106276 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  JNN41_RS00505 (JNN41_00505) yoeI 106491..106553 (+) 63 WP_010723108.1 membrane protein YoeI -
  JNN41_RS00510 (JNN41_00510) plaP 106543..107901 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  JNN41_RS00515 (JNN41_00515) tsuA 108080..109138 (+) 1059 WP_029397759.1 thiosulfate utilization transporter TsuA/YeeE -
  JNN41_RS00520 (JNN41_00520) tsuB 109152..109379 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  JNN41_RS00525 (JNN41_00525) sbcB 109422..110846 (-) 1425 WP_114213092.1 exodeoxyribonuclease I Machinery gene
  JNN41_RS00530 (JNN41_00530) - 111028..112206 (+) 1179 WP_032333394.1 site-specific integrase -
  JNN41_RS00535 (JNN41_00535) - 112187..112378 (-) 192 WP_000132739.1 AlpA family phage regulatory protein -
  JNN41_RS00540 (JNN41_00540) - 112543..112842 (-) 300 WP_000118152.1 hypothetical protein -
  JNN41_RS00545 (JNN41_00545) - 112842..113006 (-) 165 WP_202859635.1 DUF2737 family protein -
  JNN41_RS00550 (JNN41_00550) - 113003..113284 (-) 282 WP_024215524.1 DUF5405 family protein -
  JNN41_RS00555 (JNN41_00555) - 113301..113615 (-) 315 WP_000753555.1 hypothetical protein -
  JNN41_RS00560 (JNN41_00560) - 113627..114109 (-) 483 WP_202859636.1 siphovirus Gp157 family protein -
  JNN41_RS00565 (JNN41_00565) - 114093..115004 (-) 912 WP_032174196.1 recombinase RecT -
  JNN41_RS00570 (JNN41_00570) - 115001..115309 (-) 309 WP_106490622.1 hypothetical protein -
  JNN41_RS00575 (JNN41_00575) - 115394..115564 (-) 171 WP_202859637.1 hypothetical protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54353.62 Da        Isoelectric Point: 5.3498

>NTDB_id=463011 JNN41_RS00525 WP_114213092.1 109422..110846(-) (sbcB) [Escherichia coli strain RIVM_C029951]
MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
AAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPIKLVHINKCPVLAQANTLRPEDAD
RLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=463011 JNN41_RS00525 WP_114213092.1 109422..110846(-) (sbcB) [Escherichia coli strain RIVM_C029951]
ATGACAGACACAGATAAACAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCGCGG
ATGACTATTTACCCCAGCCTGGAGCCGTATTAATTACAGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAACGAA
GCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGAATATCTCTTTACCCATCGTAATAAAC
ACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGCGGC
AATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGACAT
TTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACGCCG
CCGTTCCGATTAAGCTGGTGCACATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCCGAC
CGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGTGGT
GGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTGACG
CCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGATAAA
CGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTGGCT
TGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGTATG
CCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(211-471)

Exonuclease (RNase_T)

(12-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

99.156

0.582