Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   SAOV_RS08295 Genome accession   NC_017337
Coordinates   1660465..1661151 (-) Length   228 a.a.
NCBI ID   WP_078061108.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus ED133     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1655465..1666151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAOV_RS08275 (SAOV_1585) rpsT 1656379..1656630 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  SAOV_RS08280 (SAOV_1586) holA 1656675..1657649 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  SAOV_RS08285 (SAOV_1587) comEC 1657706..1659907 (-) 2202 WP_041204299.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SAOV_RS08290 (SAOV_1588) - 1659912..1660373 (-) 462 WP_000439693.1 ComE operon protein 2 -
  SAOV_RS08295 (SAOV_1589) comEA 1660465..1661151 (-) 687 WP_078061108.1 ComEA family DNA-binding protein Machinery gene
  SAOV_RS08300 (SAOV_1590) - 1661191..1661907 (-) 717 WP_000084841.1 class I SAM-dependent DNA methyltransferase -
  SAOV_RS08305 (SAOV_1591) rsfS 1661910..1662263 (-) 354 WP_001088020.1 ribosome silencing factor -
  SAOV_RS08310 (SAOV_1592) yqeK 1662264..1662848 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  SAOV_RS08315 (SAOV_1593) nadD 1662838..1663407 (-) 570 WP_000725163.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  SAOV_RS08320 (SAOV_1594) yhbY 1663410..1663700 (-) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  SAOV_RS08325 (SAOV_1595) aroE 1663704..1664510 (-) 807 WP_000666764.1 shikimate dehydrogenase -
  SAOV_RS08330 (SAOV_1596) yqeH 1664524..1665624 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25764.51 Da        Isoelectric Point: 9.5413

>NTDB_id=46300 SAOV_RS08295 WP_078061108.1 1660465..1661151(-) (comEA) [Staphylococcus aureus subsp. aureus ED133]
MVLLYQFLLRYKDFLTQCKLYIISAVVLIMVLIGFIFWRQDDYTTRNFENKDTALKQSTSEISSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSEWMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=46300 SAOV_RS08295 WP_078061108.1 1660465..1661151(-) (comEA) [Staphylococcus aureus subsp. aureus ED133]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGCAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTACAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAATTAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATGGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.916

99.561

0.965
  comEA Staphylococcus aureus N315

96.916

99.561

0.965

Multiple sequence alignment