Detailed information NTG0462976

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: HWV68_RS20125
• Genome accession: NZ_CP058242
• Coordinates: 3846008..3847153 (+)
• Length: 381 a.a.
• NCBI ID: WP_003227549.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain SP1
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3841008..3852153

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HWV68_RS20105 (HWV68_20100)	albF	3841024..3842304 (+)	1281	WP_003242974.1	pitrilysin family protein	-
HWV68_RS20110 (HWV68_20105)	albG	3842301..3843002 (+)	702	WP_003243391.1	antilisterial bacteriocin subtilosin biosynthesis protein AlbG	-
HWV68_RS20115 (HWV68_20110)	ywhL	3843008..3844384 (-)	1377	WP_003244415.1	YncE family protein	-
HWV68_RS20120 (HWV68_20115)	ywhK	3844423..3845778 (-)	1356	WP_003227552.1	YncE family protein	-
HWV68_RS22235	-	3845775..3846005 (-)	231	WP_009968328.1	hypothetical protein	-
HWV68_RS20125 (HWV68_20120)	rapF	3846008..3847153 (+)	1146	WP_003227549.1	response regulator aspartate phosphatase RapF	Regulator
HWV68_RS20130 (HWV68_20125)	phrF	3847137..3847256 (+)	120	WP_009968329.1	phosphatase RapF inhibitor PhrF	Regulator
HWV68_RS20135 (HWV68_20130)	ywhH	3847355..3847828 (+)	474	WP_003227547.1	YbaK/EbsC family protein	-
HWV68_RS20140 (HWV68_20135)	speB	3847860..3848732 (-)	873	WP_003227545.1	agmatinase	-
HWV68_RS20145 (HWV68_20140)	speE	3848793..3849623 (-)	831	WP_003227543.1	spermidine synthase	-
HWV68_RS20150 (HWV68_20145)	pbpG	3849825..3851900 (+)	2076	WP_003227540.1	transglycosylase domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45609.09 Da
• Isoelectric Point: 5.1503

>NTDB_id=462976 HWV68_RS20125 WP_003227549.1 3846008..3847153(+) (rapF) [Bacillus subtilis strain SP1]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED
AIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI
QGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=462976 HWV68_RS20125 WP_003227549.1 3846008..3847153(+) (rapF) [Bacillus subtilis strain SP1]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTAATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAACTTCTTCAG
AGGCATGTACGAGCTGGACCAGCGGGAATATCTGTCGGCTATTAAATTTTTCAAAAAGGCCGAAAGCAAGCTGATATTCG
TTAAGGATCGGATAGAGAAAGCTGAGTTTTTCTTTAAGATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCA
ATGGACTATGCACGGCAAGCATATGAAATATACAAAGAACATGAAGCTTATAATATAAGATTGCTGCAGTGTCATTCTTT
ATTTGCCACCAATTTTTTAGATTTAAAACAGTATGAGGATGCCATCTCACATTTTCAAAAAGCTTATTCTATGGCAGAAG
CTGAAAAGCAGCCCCAATTAATGGGGAGAACTTTGTACAATATCGGGCTTTGTAAAAACAGCCAAAGCCAATATGAGGAT
GCCATACCTTATTTCAAAAGAGCAATAGCTGTTTTTGAAGAATCAAATATTCTTCCTTCCTTACCTCAAGCGTATTTTTT
AATTACACAGATCCATTATAAATTAGGAAAAATAGATAAAGCTCATGAATATCATAGTAAGGGAATGGCTTATTCACAAA
AGGCCGGAGATGTAATATATTTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCGGATGAAGAAGCAATT
CAAGGATTTTTTGATTTTCTCGAAAGTAAAATGTTGTATGCTGATCTTGAAGATTTCGCTATTGATGTGGCAAAATATTA
TCATGAACGTAAAAATTTTCAAAAAGCTTCTGCTTATTTTTTGAAGGTGGAACAAGTAAGGCAACTTATTCAAGGAGGAG
TGAGTTTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_12) (223-290)

• Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3) (132-208)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	100	100	1
rapC	Bacillus subtilis subsp. subtilis str. 168	57.368	99.738	0.572