Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   HWV68_RS13295 Genome accession   NZ_CP058242
Coordinates   2552658..2552993 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain SP1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2547658..2557993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWV68_RS13275 (HWV68_13270) gcvT 2548250..2549338 (-) 1089 WP_004398598.1 glycine cleavage system aminomethyltransferase GcvT -
  HWV68_RS13280 (HWV68_13275) hepAA 2549780..2551453 (+) 1674 WP_004398544.1 SNF2-related protein -
  HWV68_RS13285 (HWV68_13280) yqhG 2551474..2552268 (+) 795 WP_003230200.1 YqhG family protein -
  HWV68_RS13290 (HWV68_13285) sinI 2552451..2552624 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  HWV68_RS13295 (HWV68_13290) sinR 2552658..2552993 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  HWV68_RS13300 (HWV68_13295) tasA 2553086..2553871 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  HWV68_RS13305 (HWV68_13300) sipW 2553935..2554507 (-) 573 WP_003246088.1 signal peptidase I SipW -
  HWV68_RS13310 (HWV68_13305) tapA 2554491..2555252 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  HWV68_RS13315 (HWV68_13310) yqzG 2555524..2555850 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  HWV68_RS13320 (HWV68_13315) spoIITA 2555892..2556071 (-) 180 WP_003230176.1 YqzE family protein -
  HWV68_RS13325 (HWV68_13320) comGG 2556142..2556516 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  HWV68_RS13330 (HWV68_13325) comGF 2556517..2556900 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  HWV68_RS13335 (HWV68_13330) comGE 2556926..2557273 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  HWV68_RS13340 (HWV68_13335) comGD 2557257..2557688 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  HWV68_RS13345 (HWV68_13340) comGC 2557678..2557974 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=462941 HWV68_RS13295 WP_003226345.1 2552658..2552993(+) (sinR) [Bacillus subtilis strain SP1]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=462941 HWV68_RS13295 WP_003226345.1 2552658..2552993(+) (sinR) [Bacillus subtilis strain SP1]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1