Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   HUW87_RS05345 Genome accession   NZ_CP058237
Coordinates   1120026..1121840 (+) Length   604 a.a.
NCBI ID   WP_063082905.1    Uniprot ID   A0A9Q8N9H1
Organism   Weissella cibaria strain JW15     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1115026..1126840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUW87_RS12435 (HUW87_05290) - 1115993..1116932 (+) 940 Protein_1009 PTS transporter subunit EIIC -
  HUW87_RS05325 (HUW87_05295) - 1117004..1117264 (+) 261 WP_003610944.1 transposase -
  HUW87_RS05330 (HUW87_05300) - 1117291..1118106 (+) 816 WP_164240181.1 IS3 family transposase -
  HUW87_RS05335 (HUW87_05305) - 1118419..1118850 (+) 432 Protein_1012 PTS transporter subunit EIIC -
  HUW87_RS05340 (HUW87_05310) - 1118952..1119986 (+) 1035 WP_141146532.1 competence protein CoiA family protein -
  HUW87_RS05345 (HUW87_05315) pepF 1120026..1121840 (+) 1815 WP_063082905.1 oligoendopeptidase F Regulator
  HUW87_RS05350 (HUW87_05320) - 1121930..1122649 (-) 720 WP_063082904.1 MIP/aquaporin family protein -
  HUW87_RS05355 (HUW87_05325) - 1122957..1123346 (+) 390 WP_242874545.1 DUF948 domain-containing protein -
  HUW87_RS05360 (HUW87_05330) - 1123362..1123934 (+) 573 WP_010372524.1 hypothetical protein -
  HUW87_RS05365 (HUW87_05335) ccpA 1123993..1124994 (-) 1002 WP_063082902.1 catabolite control protein A -
  HUW87_RS05370 (HUW87_05340) - 1125246..1126346 (+) 1101 WP_010373028.1 Xaa-Pro peptidase family protein -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67662.53 Da        Isoelectric Point: 4.2890

>NTDB_id=462879 HUW87_RS05345 WP_063082905.1 1120026..1121840(+) (pepF) [Weissella cibaria strain JW15]
MAKELPLRDALPESMTWNLQTIFASDEAWEDAFEELADRLESADFFAQSATTSGTDLYNALQYGLGVMRDLEKLYVYASM
KSDQDTANAYYQGLSNRAEALAARVSAAIAFFDPAVLSLSEAELTAFFEAEPKLGAYKHYFESILTQQGHVLTPDQEALL
AAAGDVFGASERTFGVLDNADIKFEAVANEDGELETLSNGVYSRLLESTDPEVRRNAFQTFYKSYVSLENTFASLIASHV
KGHNFMAAVHNYDNAREAALAGNHVPEVVYDTLVAEVNEALPLLHRYVALRKQLLGLDELHSYDLYTPILGEPDFTIDYE
SAQAEALKALAPLGEDYLEVVNTAFDNRWIDVIENKGKRSGAYSGGSYDTNPFILLNWVDNLNNLSTLVHEMGHSVHSYL
TRQNQPYHYGDYPIFLAEIASTTNENLLTDYLLKTVTDKKLRAYILNQYLDGVKGTVFRQTQFAEFEQWLHVMDAQGVPL
TADVLDEAYGELNRRYYGPALTFDDEIAHEWERIPHFYYNFYVFQYSTGFAAATAMADKILTEGAPAVAAYKEYLKAGSS
AFPIDVMKKAGLDMTKPDYLRDTFKVFEGRLNEFEALVAELAAE

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=462879 HUW87_RS05345 WP_063082905.1 1120026..1121840(+) (pepF) [Weissella cibaria strain JW15]
ATGGCCAAAGAATTACCATTACGAGATGCATTGCCCGAGTCAATGACTTGGAATTTGCAGACGATTTTTGCTTCTGATGA
AGCGTGGGAAGATGCCTTTGAAGAATTGGCCGATCGGTTAGAGTCAGCGGACTTCTTCGCCCAATCAGCAACGACGTCAG
GTACAGATTTGTACAATGCGTTGCAATACGGCTTGGGTGTGATGCGTGACTTAGAAAAGCTGTATGTCTATGCTTCAATG
AAGTCAGACCAAGATACAGCCAACGCTTATTATCAAGGGTTGAGCAATCGAGCTGAAGCCTTGGCGGCACGTGTTTCTGC
GGCCATTGCATTCTTTGATCCAGCTGTTTTGTCACTTTCAGAAGCTGAATTAACGGCCTTTTTTGAAGCAGAACCTAAGC
TGGGTGCGTACAAGCATTACTTCGAGAGCATCCTGACGCAACAAGGTCACGTCTTAACGCCAGACCAAGAAGCATTGTTA
GCTGCTGCCGGGGATGTTTTTGGGGCTTCAGAACGGACGTTTGGTGTGTTGGATAATGCCGATATTAAGTTTGAAGCTGT
TGCCAACGAAGATGGTGAACTGGAGACGTTGTCAAACGGTGTCTATTCACGTTTGTTGGAGTCGACTGACCCGGAAGTAC
GTCGAAATGCTTTCCAAACGTTCTACAAGTCATATGTCTCACTTGAAAATACCTTTGCATCTTTGATCGCAAGTCACGTG
AAGGGTCATAACTTTATGGCGGCGGTTCACAACTATGATAATGCGCGTGAAGCTGCTTTAGCTGGTAACCATGTGCCAGA
AGTGGTGTACGATACATTGGTTGCGGAAGTAAACGAGGCGTTGCCATTGTTGCATCGTTACGTTGCCCTCCGAAAGCAAT
TGTTGGGCTTGGACGAATTGCACTCATACGATTTGTATACCCCAATTTTGGGTGAACCTGACTTTACGATTGATTACGAA
TCTGCTCAGGCTGAGGCATTAAAGGCGTTGGCGCCATTGGGGGAAGATTATCTGGAAGTTGTCAATACAGCCTTTGATAA
TCGTTGGATTGATGTCATTGAGAATAAGGGCAAGCGTTCAGGAGCTTACTCGGGTGGTTCATACGATACAAATCCATTCA
TTTTGCTGAACTGGGTCGATAACTTGAACAATTTGAGCACTTTAGTTCACGAAATGGGCCACTCAGTGCACTCGTATTTG
ACTCGTCAAAATCAACCATACCACTACGGCGATTACCCAATCTTCTTGGCTGAAATTGCGTCAACGACGAACGAAAACTT
GTTGACGGATTACTTGCTTAAGACGGTGACGGATAAGAAGTTGCGTGCGTATATCTTGAATCAGTACTTGGATGGTGTGA
AGGGAACAGTCTTCCGTCAAACCCAATTTGCAGAGTTTGAGCAATGGTTGCACGTTATGGATGCGCAAGGCGTGCCATTG
ACAGCTGATGTTTTGGATGAGGCCTATGGTGAGCTTAACCGACGTTACTACGGCCCAGCCTTGACGTTTGATGATGAAAT
TGCGCACGAGTGGGAGCGTATTCCACACTTCTATTACAACTTCTACGTGTTCCAATACAGTACTGGTTTTGCTGCTGCAA
CGGCAATGGCGGACAAGATTTTGACTGAAGGGGCACCGGCTGTGGCGGCTTACAAAGAATACTTGAAGGCTGGATCATCT
GCATTCCCAATTGATGTGATGAAGAAGGCTGGGCTTGATATGACTAAGCCAGATTACTTGCGTGACACATTCAAAGTGTT
CGAAGGACGCTTGAACGAATTTGAAGCGTTGGTGGCAGAATTAGCTGCTGAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(205-584)

Oligopeptidase F (Peptidase_M3_N)

(117-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.469

97.848

0.523