Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   JNN48_RS09475 Genome accession   NZ_CP068818
Coordinates   1978534..1979961 (-) Length   475 a.a.
NCBI ID   WP_072198855.1    Uniprot ID   -
Organism   Escherichia coli strain RIVM_C028803     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1973534..1984961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNN48_RS09445 (JNN48_09445) yeeZ 1973589..1974413 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  JNN48_RS09450 (JNN48_09450) yeeY 1974459..1975388 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  JNN48_RS09455 (JNN48_09455) yoeI 1975603..1975665 (+) 63 WP_010723108.1 membrane protein YoeI -
  JNN48_RS09460 (JNN48_09460) plaP 1975655..1977013 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  JNN48_RS09465 (JNN48_09465) tsuA 1977192..1978250 (+) 1059 WP_023568741.1 thiosulfate utilization transporter TsuA/YeeE -
  JNN48_RS09470 (JNN48_09470) tsuB 1978264..1978491 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  JNN48_RS09475 (JNN48_09475) sbcB 1978534..1979961 (-) 1428 WP_072198855.1 exodeoxyribonuclease I Machinery gene
  JNN48_RS09480 (JNN48_09480) dacD 1980170..1981336 (+) 1167 WP_000830156.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  JNN48_RS09485 (JNN48_09485) sbmC 1981455..1981928 (+) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  JNN48_RS09490 (JNN48_09490) yeeA 1982126..1983184 (+) 1059 WP_001200891.1 FUSC family protein -
  JNN48_RS09495 (JNN48_09495) tmaR 1983356..1983685 (+) 330 WP_000450409.1 DUF496 family protein -
  JNN48_RS09500 (JNN48_09500) - 1983786..1983968 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  JNN48_RS09505 (JNN48_09505) - 1984040..1984168 (+) 129 Protein_1886 transposase domain-containing protein -
  JNN48_RS09510 (JNN48_09510) - 1984457..1984537 (-) 81 Protein_1887 hypothetical protein -
  JNN48_RS09515 (JNN48_09515) yeeW 1984583..1984777 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54485.80 Da        Isoelectric Point: 5.6070

>NTDB_id=462878 JNN48_RS09475 WP_072198855.1 1978534..1979961(-) (sbcB) [Escherichia coli strain RIVM_C028803]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAIIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=462878 JNN48_RS09475 WP_072198855.1 1978534..1979961(-) (sbcB) [Escherichia coli strain RIVM_C028803]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCTATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGTTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCATAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579