Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HW371_RS15720 Genome accession   NZ_CP058220
Coordinates   3213832..3214461 (-) Length   209 a.a.
NCBI ID   WP_000839136.1    Uniprot ID   A0A0D8W3X3
Organism   Escherichia coli strain 83972     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3208832..3219461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HW371_RS15705 (HW371_15565) helD 3209074..3211128 (-) 2055 WP_001443200.1 DNA helicase IV -
  HW371_RS15710 (HW371_15570) yccF 3211251..3211697 (+) 447 WP_001261236.1 YccF domain-containing protein -
  HW371_RS15715 (HW371_15575) yccS 3211707..3213869 (+) 2163 WP_000875041.1 YccS family putative transporter -
  HW371_RS15720 (HW371_15580) sxy/tfoX 3213832..3214461 (-) 630 WP_000839136.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HW371_RS15725 (HW371_15585) sulA 3214680..3215189 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  HW371_RS15730 (HW371_15590) ompA 3215545..3216597 (+) 1053 WP_001528868.1 porin OmpA -
  HW371_RS15735 (HW371_15595) matP 3216675..3217127 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  HW371_RS15740 (HW371_15600) ycbZ 3217313..3219073 (+) 1761 WP_000156506.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24128.06 Da        Isoelectric Point: 9.2180

>NTDB_id=462784 HW371_RS15720 WP_000839136.1 3213832..3214461(-) (sxy/tfoX) [Escherichia coli strain 83972]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=462784 HW371_RS15720 WP_000839136.1 3213832..3214461(-) (sxy/tfoX) [Escherichia coli strain 83972]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTAACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D8W3X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99