Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrC   Type   Regulator
Locus tag   HWH77_RS12470 Genome accession   NZ_CP058216
Coordinates   2467796..2467915 (+) Length   39 a.a.
NCBI ID   WP_003156334.1    Uniprot ID   I2C1C3
Organism   Bacillus velezensis strain LF01     
Function   antagonize RapC (predicted from homology)   
Competence regulation

Genomic Context

Location: 2462796..2472915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWH77_RS12455 (HWH77_12460) - 2464408..2465091 (+) 684 WP_103695313.1 response regulator transcription factor -
  HWH77_RS12460 (HWH77_12465) - 2465078..2466511 (+) 1434 WP_161503399.1 HAMP domain-containing sensor histidine kinase -
  HWH77_RS12465 (HWH77_12470) rapC 2466664..2467812 (+) 1149 WP_014304340.1 Rap family tetratricopeptide repeat protein Regulator
  HWH77_RS12470 (HWH77_12475) phrC 2467796..2467915 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  HWH77_RS12475 (HWH77_12480) - 2468065..2468175 (-) 111 WP_369719092.1 YjcZ family sporulation protein -
  HWH77_RS12480 (HWH77_12485) - 2468255..2469619 (-) 1365 WP_014304341.1 aspartate kinase -
  HWH77_RS12485 (HWH77_12490) ceuB 2470034..2470987 (+) 954 WP_046559346.1 ABC transporter permease Machinery gene
  HWH77_RS12490 (HWH77_12495) - 2470977..2471924 (+) 948 WP_003156331.1 iron chelate uptake ABC transporter family permease subunit -
  HWH77_RS12495 (HWH77_12500) - 2471918..2472676 (+) 759 WP_003156330.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4228.96 Da        Isoelectric Point: 8.0285

>NTDB_id=462720 HWH77_RS12470 WP_003156334.1 2467796..2467915(+) (phrC) [Bacillus velezensis strain LF01]
MKLKSKWFVICLAAAAIFTVTGAGQTDQAEFHVAERGMT

Nucleotide


Download         Length: 120 bp        

>NTDB_id=462720 HWH77_RS12470 WP_003156334.1 2467796..2467915(+) (phrC) [Bacillus velezensis strain LF01]
ATGAAATTGAAATCTAAATGGTTTGTTATTTGTTTAGCAGCCGCCGCGATTTTTACAGTGACAGGTGCAGGCCAGACAGA
TCAGGCTGAATTCCATGTAGCTGAAAGAGGAATGACGTGA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C1C3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrC Bacillus subtilis subsp. subtilis str. 168

70

100

0.718