Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   HWH77_RS10790 Genome accession   NZ_CP058216
Coordinates   2132904..2133194 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain LF01     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2127904..2138194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWH77_RS10750 (HWH77_10755) darA 2127921..2128250 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  HWH77_RS10755 (HWH77_10760) - 2128263..2128703 (+) 441 WP_004264730.1 YaaR family protein -
  HWH77_RS10760 (HWH77_10765) holB 2128715..2129704 (+) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  HWH77_RS10765 (HWH77_10770) ricT 2129707..2130534 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  HWH77_RS10770 (HWH77_10775) yabA 2130549..2130908 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  HWH77_RS10775 (HWH77_10780) - 2130969..2131712 (+) 744 WP_014304191.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  HWH77_RS10780 (HWH77_10785) - 2131699..2131998 (+) 300 WP_004264714.1 GIY-YIG nuclease family protein -
  HWH77_RS10785 (HWH77_10790) rsmI 2131973..2132854 (+) 882 WP_044052729.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  HWH77_RS10790 (HWH77_10795) abrB 2132904..2133194 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  HWH77_RS10795 (HWH77_10800) metG 2133677..2135668 (+) 1992 WP_004264704.1 methionine--tRNA ligase -
  HWH77_RS10800 (HWH77_10805) - 2135744..2136511 (+) 768 WP_004264700.1 TatD family hydrolase -
  HWH77_RS10805 (HWH77_10810) - 2136646..2137971 (+) 1326 WP_094247906.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=462713 HWH77_RS10790 WP_169510469.1 2132904..2133194(-) (abrB) [Bacillus velezensis strain LF01]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=462713 HWH77_RS10790 WP_169510469.1 2132904..2133194(-) (abrB) [Bacillus velezensis strain LF01]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979