Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HVY12_RS05675 Genome accession   NZ_CP058209
Coordinates   1089725..1090354 (-) Length   209 a.a.
NCBI ID   WP_016261884.1    Uniprot ID   A0A370V9P5
Organism   Escherichia marmotae strain RHB24-C12     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1084725..1095354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HVY12_RS05660 (HVY12_05675) helD 1084967..1087021 (-) 2055 WP_181238201.1 DNA helicase IV -
  HVY12_RS05665 (HVY12_05680) - 1087144..1087590 (+) 447 WP_001261229.1 YccF domain-containing protein -
  HVY12_RS05670 (HVY12_05685) yccS 1087600..1089762 (+) 2163 WP_181238000.1 YccS family putative transporter -
  HVY12_RS05675 (HVY12_05690) sxy/tfoX 1089725..1090354 (-) 630 WP_016261884.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HVY12_RS05680 (HVY12_05695) sulA 1090572..1091081 (+) 510 WP_000288698.1 SOS-induced cell division inhibitor SulA -
  HVY12_RS05685 (HVY12_05700) ompA 1091437..1092489 (+) 1053 WP_001516132.1 porin OmpA -
  HVY12_RS05690 (HVY12_05705) matP 1092564..1093016 (-) 453 WP_001516131.1 macrodomain Ter protein MatP -
  HVY12_RS05695 (HVY12_05710) - 1093204..1094964 (+) 1761 WP_085448888.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24216.19 Da        Isoelectric Point: 9.5571

>NTDB_id=462621 HVY12_RS05675 WP_016261884.1 1089725..1090354(-) (sxy/tfoX) [Escherichia marmotae strain RHB24-C12]
MKSLSYKRIYKSQKYLATLGTIEYRSLFGSYSLTVDDTVFAVVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRFVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKTTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSITPKQEFPVELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=462621 HVY12_RS05675 WP_016261884.1 1089725..1090354(-) (sxy/tfoX) [Escherichia marmotae strain RHB24-C12]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAGTCACAGAAATACCTGGCAACGTTAGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGTCTGACCGTTGACGACACGGTATTTGCGGTAGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGCGCACAATACTGTGTAAAACATCCGCCAGTCTGGCTGACATATAAAAAGTGTGGACGGTTCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTTTATGGCGAAATCAACTGAAGCTGGTACGTCTGTCAAAATATTCTCTCGACGCAGCGCT
TAAAGAGAAAACTACACGTAATACTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAAGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCGAAAATGTGTTGGTTGCGGCTGCGGCAGCAAAAT
AGTCTGGTGACAGAAAAGATCTTGTTTATGCTTGAAGGCGCAATTATCGGTATTCATGAAGCAGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCTGAATGGGCTGATTCTATTACGCCAAAGCAGGAGTTTCCTGTGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(15-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V9P5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

97.129

100

0.971