Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   JNN49_RS09130 Genome accession   NZ_CP068815
Coordinates   1953351..1954778 (-) Length   475 a.a.
NCBI ID   WP_000980604.1    Uniprot ID   -
Organism   Escherichia coli strain RIVM_C028620     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1948351..1959778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNN49_RS09095 (JNN49_09095) hisL 1948935..1948985 (-) 51 WP_001364200.1 his operon leader peptide -
  JNN49_RS09100 (JNN49_09100) yefM 1949268..1949519 (+) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  JNN49_RS09105 (JNN49_09105) yoeB 1949516..1949770 (+) 255 WP_000767822.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  JNN49_RS09110 (JNN49_09110) yeeZ 1949853..1950677 (+) 825 WP_202847282.1 SDR family oxidoreductase -
  JNN49_RS09115 (JNN49_09115) yeeY 1950723..1951652 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  JNN49_RS09120 (JNN49_09120) yoeI 1951867..1951929 (+) 63 WP_010723108.1 membrane protein YoeI -
  JNN49_RS09125 (JNN49_09125) plaP 1951919..1953277 (+) 1359 WP_000019194.1 putrescine/proton symporter PlaP -
  JNN49_RS09130 (JNN49_09130) sbcB 1953351..1954778 (-) 1428 WP_000980604.1 exodeoxyribonuclease I Machinery gene
  JNN49_RS09135 (JNN49_09135) dacD 1954987..1956153 (+) 1167 WP_001297905.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  JNN49_RS09140 (JNN49_09140) sbmC 1956272..1956745 (+) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  JNN49_RS09145 (JNN49_09145) yeeA 1956943..1958001 (+) 1059 WP_001200890.1 FUSC family protein -
  JNN49_RS09150 (JNN49_09150) tmaR 1958173..1958502 (+) 330 WP_000450409.1 DUF496 family protein -
  JNN49_RS25225 (JNN49_09155) - 1958603..1958785 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  JNN49_RS24950 - 1958905..1958985 (+) 81 WP_023441679.1 hypothetical protein -
  JNN49_RS09165 (JNN49_09165) - 1959274..1959354 (-) 81 Protein_1817 hypothetical protein -
  JNN49_RS09170 (JNN49_09170) yeeW 1959400..1959594 (-) 195 WP_000988601.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54442.73 Da        Isoelectric Point: 5.4720

>NTDB_id=462613 JNN49_RS09130 WP_000980604.1 1953351..1954778(-) (sbcB) [Escherichia coli strain RIVM_C028620]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=462613 JNN49_RS09130 WP_000980604.1 1953351..1954778(-) (sbcB) [Escherichia coli strain RIVM_C028620]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGAGAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583