Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   JNN61_RS09355 Genome accession   NZ_CP068812
Coordinates   1973100..1974293 (+) Length   397 a.a.
NCBI ID   WP_021538956.1    Uniprot ID   -
Organism   Escherichia coli strain RIVM_C029020     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1968100..1979293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNN61_RS09340 (JNN61_09340) - 1968615..1970291 (+) 1677 WP_001305083.1 polysaccharide biosynthesis/export family protein -
  JNN61_RS09345 (JNN61_09345) kdsB 1970301..1971041 (+) 741 WP_000030749.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  JNN61_RS09350 (JNN61_09350) - 1971038..1973065 (+) 2028 WP_021538955.1 capsular polysaccharide biosynthesis protein -
  JNN61_RS09355 (JNN61_09355) kpsS 1973100..1974293 (+) 1194 WP_021538956.1 capsular biosynthesis protein Regulator
  JNN61_RS09360 (JNN61_09360) - 1974838..1975467 (-) 630 WP_021538957.1 CatB-related O-acetyltransferase -
  JNN61_RS09365 (JNN61_09365) - 1975489..1977750 (-) 2262 WP_021538958.1 hypothetical protein -
  JNN61_RS09370 (JNN61_09370) galE 1977869..1978858 (-) 990 Protein_1864 UDP-glucose 4-epimerase GalE -

Sequence

Protein


Download         Length: 397 a.a.        Molecular weight: 47325.70 Da        Isoelectric Point: 10.0815

>NTDB_id=462346 JNN61_RS09355 WP_021538956.1 1973100..1974293(+) (kpsS) [Escherichia coli strain RIVM_C029020]
MQGNALTVLLSGKKYLLLQGPMGPFFSDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPTPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSSYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNWVYYGDVKKGLE

Nucleotide


Download         Length: 1194 bp        

>NTDB_id=462346 JNN61_RS09355 WP_021538956.1 1973100..1974293(+) (kpsS) [Escherichia coli strain RIVM_C029020]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCAATGGGACCCTTTTTCAG
TGATGTTGCCGAGTGGCTAGAGTCATTAGGTCGTAACGCTGTGAATGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTAGCTTACTACCAGACACCGAAAGAGTTTCCCGGATGGTTACGGGATCTCCACCGGCAATATGAC
TTTGACACAATCCTCTGCTTTGGCGACTGCCGCCCATTGCATAAAGAAGCAAAACGCTGGGCAAAGTCGAAAGGGATCCG
CTTCCTGGCATTTGAAGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTACGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGCCATGCTATGTGGTATTACCTGATGGGCTGGCATTACCGTCATGAGTTTCCTCGCTACCGCCACCACAA
ATCATTTTCCCCCTGGTATGAAGCACGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTACCGAGGTTAATGAACGAACTGGACCAGCGTTATTATCTTGCTGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGCAGTTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCGCGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGATTGAGTAAGG
AATATGGCTTAGGCGAGCGAGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCATGCAAAAGCGGTGGTG
ACGATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGATTAACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCTGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGTGGATATTTATTGGTGAAGACACAGGTTAATTGGGTTTATTATGGGGATGTAAAGAAAGGGTTAGAATAG

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.642

98.489

0.39