Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HV092_RS16840 Genome accession   NZ_CP058131
Coordinates   3375732..3376328 (-) Length   198 a.a.
NCBI ID   WP_181351636.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae strain RHBSTW-00138     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3370732..3381328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV092_RS16825 (HV092_16830) helD 3370943..3372997 (-) 2055 WP_057214205.1 DNA helicase IV -
  HV092_RS16830 (HV092_16835) - 3373122..3373568 (+) 447 WP_004201437.1 YccF domain-containing protein -
  HV092_RS16835 (HV092_16840) yccS 3373586..3375721 (+) 2136 WP_181351635.1 YccS family putative transporter -
  HV092_RS16840 (HV092_16845) sxy/tfoX 3375732..3376328 (-) 597 WP_181351636.1 TfoX/Sxy family DNA transformation protein Regulator
  HV092_RS16845 (HV092_16850) sulA 3376677..3377186 (+) 510 WP_130938816.1 SOS-induced cell division inhibitor SulA -
  HV092_RS16850 (HV092_16855) ompA 3377539..3378609 (+) 1071 WP_002898408.1 porin OmpA -
  HV092_RS16855 (HV092_16860) matP 3378792..3379244 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  HV092_RS16860 (HV092_16865) - 3379430..3381187 (+) 1758 WP_181351637.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22619.34 Da        Isoelectric Point: 10.4401

>NTDB_id=462298 HV092_RS16840 WP_181351636.1 3375732..3376328(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain RHBSTW-00138]
MKKLVCPRLPQFQACVSPLGQLHSRPLFGGYSLAIEDTVFAMVAEGNIYLKACEQSAAYRVEHHNPLLMLRRHGRIVPLK
YYQIDDALWRDEKQLFRLSLMSWQSAQREKRRRRSSGRLKDLPNISFHMELQLIHSGIPDVLALREVGARQAWLKLRENN
ASLSHNVLLALEGAIVGVHAAALPTPRRQELLEWAAAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=462298 HV092_RS16840 WP_181351636.1 3375732..3376328(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain RHBSTW-00138]
ATGAAAAAACTTGTATGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTTCACTCTCGCCCCCT
GTTTGGCGGCTACAGCCTGGCTATCGAAGATACCGTGTTTGCGATGGTGGCAGAGGGAAATATTTATCTGAAAGCCTGCG
AGCAGAGCGCTGCCTATCGGGTAGAACACCATAATCCTTTATTGATGCTGCGCCGACATGGGCGCATCGTGCCGCTAAAG
TATTATCAAATTGACGATGCCTTGTGGCGCGATGAGAAACAGCTTTTCCGCTTATCGCTGATGTCGTGGCAGAGCGCCCA
GCGTGAAAAACGTCGCCGCCGGTCGTCGGGACGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACTCGGGCATACCAGATGTGTTAGCACTACGGGAGGTGGGCGCCCGCCAGGCCTGGCTAAAGCTGCGTGAGAATAAT
GCTTCCCTATCACACAACGTCTTGCTGGCGCTGGAGGGGGCTATCGTTGGCGTTCACGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTGGAATGGGCGGCTGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.769

98.485

0.5