Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   HV094_RS20885 Genome accession   NZ_CP058128
Coordinates   4310554..4311987 (+) Length   477 a.a.
NCBI ID   WP_045622108.1    Uniprot ID   -
Organism   Enterobacter hormaechei strain RHBSTW-00140     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4305554..4316987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV094_RS20855 (HV094_20860) - 4306121..4307098 (+) 978 WP_045622105.1 calcium/sodium antiporter -
  HV094_RS20860 (HV094_20865) kdsD 4307112..4308098 (+) 987 WP_003861853.1 arabinose-5-phosphate isomerase KdsD -
  HV094_RS20865 (HV094_20870) kdsC 4308113..4308679 (+) 567 WP_045622106.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  HV094_RS20870 (HV094_20875) lptC 4308676..4309251 (+) 576 WP_022649529.1 LPS export ABC transporter periplasmic protein LptC -
  HV094_RS20875 (HV094_20880) lptA 4309220..4309774 (+) 555 WP_006812136.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  HV094_RS20880 (HV094_20885) lptB 4309781..4310506 (+) 726 WP_003861862.1 LPS export ABC transporter ATP-binding protein -
  HV094_RS20885 (HV094_20890) rpoN/rpoN1 4310554..4311987 (+) 1434 WP_045622108.1 RNA polymerase factor sigma-54 Machinery gene
  HV094_RS20890 (HV094_20895) hpf 4312010..4312297 (+) 288 WP_014171818.1 ribosome hibernation promoting factor -
  HV094_RS20895 (HV094_20900) ptsN 4312380..4312871 (+) 492 WP_003861869.1 PTS IIA-like nitrogen regulatory protein PtsN -
  HV094_RS20900 (HV094_20905) rapZ 4312917..4313771 (+) 855 WP_003861870.1 RNase adapter RapZ -
  HV094_RS20905 (HV094_20910) npr 4313768..4314040 (+) 273 WP_003861872.1 PTS phosphocarrier protein NPr -
  HV094_RS20910 (HV094_20915) mtgA 4314080..4314805 (-) 726 WP_022649531.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  HV094_RS20915 (HV094_20920) elbB 4314802..4315455 (-) 654 WP_038416794.1 isoprenoid biosynthesis glyoxalase ElbB -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54127.03 Da        Isoelectric Point: 4.3575

>NTDB_id=462278 HV094_RS20885 WP_045622108.1 4310554..4311987(+) (rpoN/rpoN1) [Enterobacter hormaechei strain RHBSTW-00140]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALDSNPLLEQTDLHDEVDAQQTQDTETLDSVDALEQKEMPE
ELPLDASWDEIYTAGTPSGTRADYQDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVTLDE
ILESIGDDEIELEEIEAVLKRVQRFDPIGVAAKDLRDCLLIQLSQFAKETPWIDEARLIISEHLDLLANHDFRTLMRVTR
LKEEVLKEAVNLIQSLDPRPGQSIQTSEPEYVIPDVLVRKHNGRWVVELNADSIPRLQINQQYASMCTSARNDADNQYIR
SNLQEARWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEFMKPMVLADIAQAVQMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTMLSDQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=462278 HV094_RS20885 WP_045622108.1 4310554..4311987(+) (rpoN/rpoN1) [Enterobacter hormaechei strain RHBSTW-00140]
ATGAAGCAAGGTTTGCAATTACGGCTCAGCCAGCAACTGGCCATGACGCCGCAGCTACAACAGGCAATCCGTCTGTTGCA
GCTGTCCACGTTAGAACTCCAGCAGGAGCTCCAGCAGGCGCTGGACAGCAATCCGCTGCTGGAGCAAACCGATCTTCATG
ACGAGGTAGACGCTCAGCAGACGCAGGACACAGAAACGCTCGACTCCGTAGATGCGCTCGAACAGAAAGAGATGCCGGAG
GAACTGCCGCTGGATGCCAGCTGGGATGAAATCTACACCGCGGGTACCCCTTCCGGGACGCGTGCAGACTACCAGGACGA
TGAACTCCCGGTCTACCAGGGCGAAACCACCCAGTCGCTTCAGGACTACCTGATGTGGCAGGTGGAGCTGACGCCTTTCT
CCGATACCGATCGCGCCATTGCCACCTCGATTGTCGATGCCGTTGACGACACGGGCTATTTGACCGTGACGCTGGACGAG
ATTCTTGAAAGCATCGGCGATGACGAGATTGAACTGGAAGAGATTGAAGCCGTCCTGAAACGCGTTCAGCGTTTCGACCC
GATTGGCGTCGCCGCGAAAGATCTGCGCGACTGCCTTCTGATCCAGCTTTCGCAGTTTGCCAAAGAGACACCGTGGATTG
ACGAAGCCCGGCTCATCATCAGCGAGCATCTGGATTTGCTGGCAAATCACGACTTCCGCACCCTGATGCGCGTCACGCGC
CTCAAAGAAGAGGTGCTGAAGGAAGCGGTGAATCTGATCCAGTCACTCGATCCGCGTCCGGGGCAATCGATCCAGACCAG
CGAACCGGAATACGTTATTCCTGATGTGCTGGTGAGAAAACACAATGGCCGCTGGGTCGTTGAACTGAACGCCGACAGCA
TTCCTCGCCTGCAAATCAACCAGCAATACGCCTCCATGTGCACCAGCGCCCGTAACGACGCTGATAATCAATACATTCGC
AGCAACCTTCAGGAAGCACGCTGGTTGATTAAGAGTCTGGAAAGCCGTAATGACACGCTGCTGCGCGTCAGCCGCTGTAT
TGTCGAACAGCAGCAGGCATTCTTTGAGCAGGGCGAAGAATTTATGAAACCGATGGTGCTGGCGGACATCGCCCAGGCCG
TCCAGATGCATGAATCAACCATTTCCCGCGTGACCACGCAGAAGTATCTGCACAGCCCACGCGGTATTTTTGAGCTTAAG
TATTTCTTCTCCAGCCACGTGAACACCGAAGGCGGCGGCGAAGCCTCGTCAACGGCTATTCGCGCACTGGTGAAGAAGTT
GATCGCCGCGGAGAACCCCGCGAAGCCACTCAGTGACAGTAAGTTAACCACCATGCTGTCCGATCAGGGTATTATGGTGG
CACGCCGTACTGTCGCGAAGTATCGAGAGTCTTTATCCATTCCGCCGTCTAACCAGCGTAAACAACTGGTTTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.347

100

0.48