Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   JNN42_RS09240 Genome accession   NZ_CP068811
Coordinates   1958108..1959535 (-) Length   475 a.a.
NCBI ID   WP_072198855.1    Uniprot ID   -
Organism   Escherichia coli strain RIVM_C028568     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1953108..1964535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNN42_RS09210 (JNN42_09210) yeeZ 1953163..1953987 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  JNN42_RS09215 (JNN42_09215) yeeY 1954033..1954962 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  JNN42_RS09220 (JNN42_09220) yoeI 1955177..1955239 (+) 63 WP_010723108.1 membrane protein YoeI -
  JNN42_RS09225 (JNN42_09225) plaP 1955229..1956587 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  JNN42_RS09230 (JNN42_09230) tsuA 1956766..1957824 (+) 1059 WP_023568741.1 thiosulfate utilization transporter TsuA/YeeE -
  JNN42_RS09235 (JNN42_09235) tsuB 1957838..1958065 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  JNN42_RS09240 (JNN42_09240) sbcB 1958108..1959535 (-) 1428 WP_072198855.1 exodeoxyribonuclease I Machinery gene
  JNN42_RS09245 (JNN42_09245) dacD 1959744..1960910 (+) 1167 WP_000830156.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  JNN42_RS09250 (JNN42_09250) sbmC 1961029..1961502 (+) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  JNN42_RS09255 (JNN42_09255) yeeA 1961700..1962758 (+) 1059 WP_001200891.1 FUSC family protein -
  JNN42_RS09260 (JNN42_09260) tmaR 1962930..1963259 (+) 330 WP_000450409.1 DUF496 family protein -
  JNN42_RS09265 (JNN42_09265) - 1963360..1963542 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  JNN42_RS09270 (JNN42_09270) - 1963614..1963742 (+) 129 Protein_1835 transposase domain-containing protein -
  JNN42_RS09275 (JNN42_09275) - 1964031..1964111 (-) 81 Protein_1836 hypothetical protein -
  JNN42_RS09280 (JNN42_09280) yeeW 1964157..1964351 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54485.80 Da        Isoelectric Point: 5.6070

>NTDB_id=462269 JNN42_RS09240 WP_072198855.1 1958108..1959535(-) (sbcB) [Escherichia coli strain RIVM_C028568]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAIIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=462269 JNN42_RS09240 WP_072198855.1 1958108..1959535(-) (sbcB) [Escherichia coli strain RIVM_C028568]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCTATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGTTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCATAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579