Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HVW68_RS14705 Genome accession   NZ_CP057864
Coordinates   3049465..3050079 (-) Length   204 a.a.
NCBI ID   WP_181825650.1    Uniprot ID   -
Organism   Citrobacter freundii strain RHB12-C19     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3044465..3055079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HVW68_RS14690 (HVW68_14685) helD 3044689..3046743 (-) 2055 WP_181825649.1 DNA helicase IV -
  HVW68_RS14695 (HVW68_14690) - 3046869..3047315 (+) 447 WP_003035892.1 YccF domain-containing protein -
  HVW68_RS14700 (HVW68_14695) yccS 3047334..3049487 (+) 2154 WP_032941200.1 YccS family putative transporter -
  HVW68_RS14705 (HVW68_14700) sxy/tfoX 3049465..3050079 (-) 615 WP_181825650.1 TfoX/Sxy family DNA transformation protein Regulator
  HVW68_RS14710 (HVW68_14705) sulA 3050297..3050806 (+) 510 WP_003035886.1 SOS-induced cell division inhibitor SulA -
  HVW68_RS14715 (HVW68_14710) ompA 3051164..3052222 (+) 1059 WP_003836839.1 porin OmpA -
  HVW68_RS14720 (HVW68_14715) matP 3052314..3052766 (-) 453 WP_003035881.1 macrodomain Ter protein MatP -
  HVW68_RS14725 (HVW68_14720) - 3052952..3054712 (+) 1761 WP_003035878.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23256.71 Da        Isoelectric Point: 8.6049

>NTDB_id=462142 HVW68_RS14705 WP_181825650.1 3049465..3050079(-) (sxy/tfoX) [Citrobacter freundii strain RHB12-C19]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPAMRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=462142 HVW68_RS14705 WP_181825650.1 3049465..3050079(-) (sxy/tfoX) [Citrobacter freundii strain RHB12-C19]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGGGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCTGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCAAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACTATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACACGAAGCCGCGCTCCCGGCGATGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686