Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   JNN39_RS09060 Genome accession   NZ_CP068809
Coordinates   1933772..1935199 (-) Length   475 a.a.
NCBI ID   WP_000980604.1    Uniprot ID   -
Organism   Escherichia coli strain RIVM_C028497     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1928772..1940199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNN39_RS09025 (JNN39_09025) hisL 1929356..1929406 (-) 51 WP_001364200.1 his operon leader peptide -
  JNN39_RS09030 (JNN39_09030) yefM 1929689..1929940 (+) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  JNN39_RS09035 (JNN39_09035) yoeB 1929937..1930191 (+) 255 WP_000767822.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  JNN39_RS09040 (JNN39_09040) yeeZ 1930274..1931098 (+) 825 WP_202847282.1 SDR family oxidoreductase -
  JNN39_RS09045 (JNN39_09045) yeeY 1931144..1932073 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  JNN39_RS09050 (JNN39_09050) yoeI 1932288..1932350 (+) 63 WP_010723108.1 membrane protein YoeI -
  JNN39_RS09055 (JNN39_09055) plaP 1932340..1933698 (+) 1359 WP_000019194.1 putrescine/proton symporter PlaP -
  JNN39_RS09060 (JNN39_09060) sbcB 1933772..1935199 (-) 1428 WP_000980604.1 exodeoxyribonuclease I Machinery gene
  JNN39_RS09065 (JNN39_09065) dacD 1935408..1936574 (+) 1167 WP_001297905.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  JNN39_RS09070 (JNN39_09070) sbmC 1936693..1937166 (+) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  JNN39_RS09075 (JNN39_09075) yeeA 1937364..1938422 (+) 1059 WP_001200890.1 FUSC family protein -
  JNN39_RS09080 (JNN39_09080) tmaR 1938594..1938923 (+) 330 WP_000450409.1 DUF496 family protein -
  JNN39_RS09085 (JNN39_09085) - 1939024..1939206 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  JNN39_RS09090 (JNN39_09090) - 1939260..1939406 (+) 147 Protein_1803 transposase domain-containing protein -
  JNN39_RS09095 (JNN39_09095) - 1939695..1939775 (-) 81 Protein_1804 hypothetical protein -
  JNN39_RS09100 (JNN39_09100) yeeW 1939821..1940015 (-) 195 WP_000988601.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54442.73 Da        Isoelectric Point: 5.4720

>NTDB_id=462098 JNN39_RS09060 WP_000980604.1 1933772..1935199(-) (sbcB) [Escherichia coli strain RIVM_C028497]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=462098 JNN39_RS09060 WP_000980604.1 1933772..1935199(-) (sbcB) [Escherichia coli strain RIVM_C028497]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGAGAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583