Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   JNN51_RS04850 Genome accession   NZ_CP068807
Coordinates   962332..963759 (+) Length   475 a.a.
NCBI ID   WP_000980581.1    Uniprot ID   -
Organism   Escherichia coli strain RIVM_C018583     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 957332..968759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNN51_RS04810 (JNN51_04810) yeeW 957516..957710 (+) 195 WP_000988600.1 DUF5983 family protein -
  JNN51_RS04815 (JNN51_04815) - 957756..957836 (+) 81 Protein_967 hypothetical protein -
  JNN51_RS04820 (JNN51_04820) - 958125..958253 (-) 129 Protein_968 transposase domain-containing protein -
  JNN51_RS04825 (JNN51_04825) - 958325..958507 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  JNN51_RS04830 (JNN51_04830) tmaR 958608..958937 (-) 330 WP_000450409.1 DUF496 family protein -
  JNN51_RS04835 (JNN51_04835) yeeA 959109..960167 (-) 1059 WP_001200891.1 FUSC family protein -
  JNN51_RS04840 (JNN51_04840) sbmC 960365..960838 (-) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  JNN51_RS04845 (JNN51_04845) dacD 960957..962123 (-) 1167 WP_001563931.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  JNN51_RS04850 (JNN51_04850) sbcB 962332..963759 (+) 1428 WP_000980581.1 exodeoxyribonuclease I Machinery gene
  JNN51_RS04855 (JNN51_04855) tsuB 963802..964029 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  JNN51_RS04860 (JNN51_04860) tsuA 964043..965101 (-) 1059 WP_023910197.1 thiosulfate utilization transporter TsuA/YeeE -
  JNN51_RS04865 (JNN51_04865) plaP 965280..966638 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  JNN51_RS04870 (JNN51_04870) yoeI 966628..966690 (-) 63 WP_010723108.1 membrane protein YoeI -
  JNN51_RS04875 (JNN51_04875) tnpA 966897..967355 (-) 459 WP_001550720.1 IS200/IS605 family transposase -
  JNN51_RS04880 (JNN51_04880) yeeY 967616..968545 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54484.77 Da        Isoelectric Point: 5.6070

>NTDB_id=461899 JNN51_RS04850 WP_000980581.1 962332..963759(+) (sbcB) [Escherichia coli strain RIVM_C018583]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAIIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=461899 JNN51_RS04850 WP_000980581.1 962332..963759(+) (sbcB) [Escherichia coli strain RIVM_C018583]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTAACGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCTATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCATAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579