Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HVY06_RS07760 Genome accession   NZ_CP057506
Coordinates   1642529..1643143 (+) Length   204 a.a.
NCBI ID   WP_115258917.1    Uniprot ID   A0A4V6CGY5
Organism   Citrobacter freundii strain RHB24-C05     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1637529..1648143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HVY06_RS07740 (HVY06_07745) - 1637892..1639652 (-) 1761 WP_181820142.1 Lon protease family protein -
  HVY06_RS07745 (HVY06_07750) matP 1639838..1640290 (+) 453 WP_096757641.1 macrodomain Ter protein MatP -
  HVY06_RS07750 (HVY06_07755) ompA 1640389..1641447 (-) 1059 WP_115259970.1 porin OmpA -
  HVY06_RS07755 (HVY06_07760) sulA 1641803..1642312 (-) 510 WP_096757640.1 SOS-induced cell division inhibitor SulA -
  HVY06_RS07760 (HVY06_07765) sxy/tfoX 1642529..1643143 (+) 615 WP_115258917.1 TfoX/Sxy family DNA transformation protein Regulator
  HVY06_RS07765 (HVY06_07770) yccS 1643121..1645274 (-) 2154 WP_181820143.1 YccS family putative transporter -
  HVY06_RS07770 (HVY06_07775) - 1645293..1645739 (-) 447 WP_096757638.1 YccF domain-containing protein -
  HVY06_RS07775 (HVY06_07780) helD 1645865..1647919 (+) 2055 WP_181820144.1 DNA helicase IV -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23197.78 Da        Isoelectric Point: 9.1904

>NTDB_id=461870 HVY06_RS07760 WP_115258917.1 1642529..1643143(+) (sxy/tfoX) [Citrobacter freundii strain RHB24-C05]
MKNLSYARIYKSQEYLASLGTISYRSLFGSYSLTVGDTVFAMVADGELYLRACEQSVQYCVKHSPVWLTFMKRGRPVILN
YYQVNDALWRNHPQLVSLSRYSLDAAVKEKQTRVSQHRLRELPNISFHLETLLSEAGINDEGTLRTLGAQMCWLKLLQIN
PSLTVKILYALEGAISGIHEAALPAVRRRELVEWVSSLKPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=461870 HVY06_RS07760 WP_115258917.1 1642529..1643143(+) (sxy/tfoX) [Citrobacter freundii strain RHB24-C05]
ATGAAAAACCTCTCTTATGCCAGGATCTATAAATCACAAGAATATTTGGCCTCTTTAGGTACAATTAGCTACCGCTCTTT
ATTTGGCAGTTATAGCTTGACGGTGGGTGACACGGTCTTTGCAATGGTTGCCGACGGTGAGTTATACCTGCGGGCCTGTG
AGCAAAGCGTACAGTACTGTGTCAAACATTCCCCGGTCTGGTTGACGTTTATGAAGCGGGGACGTCCCGTGATACTCAAC
TATTATCAAGTTAATGATGCGCTGTGGCGAAACCATCCGCAGTTGGTGTCTTTATCACGATATTCGCTGGATGCCGCAGT
AAAAGAAAAACAGACGCGTGTTTCGCAACACCGGTTACGGGAACTGCCGAACATTTCCTTTCATCTGGAGACCCTACTGA
GTGAAGCCGGGATTAACGATGAGGGTACATTACGCACCCTGGGTGCTCAAATGTGTTGGCTAAAGCTTTTGCAAATTAAC
CCATCGCTGACAGTGAAAATTCTTTATGCGCTTGAGGGCGCAATCAGTGGGATACATGAAGCAGCACTCCCGGCGGTTCG
CCGCCGGGAGTTGGTTGAGTGGGTGAGTTCACTTAAGCCTGAACCGGGTTACTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4V6CGY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.608

100

0.696