Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HVY30_RS07890 Genome accession   NZ_CP057458
Coordinates   1669002..1669631 (+) Length   209 a.a.
NCBI ID   WP_181671719.1    Uniprot ID   -
Organism   Escherichia fergusonii strain RHB26-C09     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1664002..1674631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HVY30_RS07870 (HVY30_07870) - 1664409..1666169 (-) 1761 WP_000156541.1 Lon protease family protein -
  HVY30_RS07875 (HVY30_07875) matP 1666354..1666809 (+) 456 WP_000877154.1 macrodomain Ter protein MatP -
  HVY30_RS07880 (HVY30_07880) ompA 1666864..1667919 (-) 1056 WP_024256413.1 porin OmpA -
  HVY30_RS07885 (HVY30_07885) sulA 1668276..1668785 (-) 510 WP_000288735.1 SOS-induced cell division inhibitor SulA -
  HVY30_RS07890 (HVY30_07890) sxy/tfoX 1669002..1669631 (+) 630 WP_181671719.1 TfoX/Sxy family DNA transformation protein Regulator
  HVY30_RS07895 (HVY30_07895) yccS 1669594..1671747 (-) 2154 WP_032243386.1 YccS family putative transporter -
  HVY30_RS07900 (HVY30_07900) - 1671767..1672213 (-) 447 WP_002431615.1 YccF domain-containing protein -
  HVY30_RS07905 (HVY30_07905) helD 1672336..1674390 (+) 2055 WP_000420509.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24375.42 Da        Isoelectric Point: 9.3659

>NTDB_id=461719 HVY30_RS07890 WP_181671719.1 1669002..1669631(+) (sxy/tfoX) [Escherichia fergusonii strain RHB26-C09]
MKNLSYDRIYKSQEYLASLGRVNYRSLFGSYSLTISDTVFAMVADGELYLRACEQSVQYCVKHTPRWLTFMKKGRLVMLN
YYRVDESLWQDQQQLIRLSRYSLDAALKEKKCLGRKYRLRDLPNITYHLESLLNEAGIKDVSTLRILGAKMCWLRLKQMN
QHITVKILYLLEGAVQDIHEAALPVVRRQELAVWVESLTPDLALLASFD

Nucleotide


Download         Length: 630 bp        

>NTDB_id=461719 HVY30_RS07890 WP_181671719.1 1669002..1669631(+) (sxy/tfoX) [Escherichia fergusonii strain RHB26-C09]
ATGAAAAATCTATCCTATGATCGGATCTATAAATCACAAGAATATTTAGCATCCCTGGGCAGGGTGAACTATCGGTCTCT
GTTTGGCAGTTACAGCTTAACTATCAGCGATACCGTGTTTGCGATGGTGGCTGATGGTGAGTTATATCTGCGCGCCTGTG
AACAAAGCGTCCAGTATTGCGTCAAACATACCCCCCGCTGGTTAACGTTTATGAAAAAAGGGCGGTTGGTCATGCTGAAC
TATTACCGGGTAGATGAAAGTTTGTGGCAGGACCAGCAGCAATTAATTCGCCTGTCGCGTTATTCGCTGGATGCAGCTCT
TAAAGAGAAGAAGTGCCTTGGCAGGAAGTATCGCTTAAGAGATCTGCCTAACATTACTTATCATCTTGAGTCGTTGCTCA
ATGAGGCGGGTATTAAAGATGTCAGCACGTTGCGTATTTTGGGGGCAAAAATGTGCTGGTTAAGGTTAAAGCAGATGAAT
CAGCACATTACCGTGAAAATACTCTATTTGCTGGAAGGCGCGGTGCAGGATATTCATGAAGCAGCGCTCCCGGTGGTCCG
TCGCCAGGAGCTTGCTGTATGGGTGGAGTCTCTTACGCCAGATCTGGCGTTGCTGGCGTCATTTGATTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.856

100

0.699