Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HVY57_RS00420 Genome accession   NZ_CP057357
Coordinates   89065..89694 (+) Length   209 a.a.
NCBI ID   WP_104917557.1    Uniprot ID   -
Organism   Escherichia fergusonii strain RHB28-C21     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 84065..94694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HVY57_RS00400 (HVY57_00400) - 84472..86232 (-) 1761 WP_000156541.1 Lon protease family protein -
  HVY57_RS00405 (HVY57_00405) matP 86417..86872 (+) 456 WP_000877154.1 macrodomain Ter protein MatP -
  HVY57_RS00410 (HVY57_00410) ompA 86927..87982 (-) 1056 WP_024256413.1 porin OmpA -
  HVY57_RS00415 (HVY57_00415) sulA 88339..88848 (-) 510 WP_000288735.1 SOS-induced cell division inhibitor SulA -
  HVY57_RS00420 (HVY57_00420) sxy/tfoX 89065..89694 (+) 630 WP_104917557.1 TfoX/Sxy family DNA transformation protein Regulator
  HVY57_RS00425 (HVY57_00425) yccS 89657..91810 (-) 2154 WP_181673006.1 YccS family putative transporter -
  HVY57_RS00430 (HVY57_00430) - 91830..92276 (-) 447 WP_002431615.1 YccF domain-containing protein -
  HVY57_RS00435 (HVY57_00435) helD 92399..94453 (+) 2055 WP_104917559.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24374.33 Da        Isoelectric Point: 9.6401

>NTDB_id=461689 HVY57_RS00420 WP_104917557.1 89065..89694(+) (sxy/tfoX) [Escherichia fergusonii strain RHB28-C21]
MKNLSYDRIYKSQEYLASLGRVNYRSLFGSYSLTISDTVFAMVADGELYLRACEQSVQYCVKHTPRWLTFMKKGRLVMLN
YYRVDESLWQDQQQLIRLSRYSLDAALKEKKSLGRKYRLRDLPNITYHLESLLNEAGIKDVSTLRILGAKMCWLRLKQMN
QHITVKILYLLEGAVQDIHEAALPVVRRQELAAWVESLTPDRALLASFD

Nucleotide


Download         Length: 630 bp        

>NTDB_id=461689 HVY57_RS00420 WP_104917557.1 89065..89694(+) (sxy/tfoX) [Escherichia fergusonii strain RHB28-C21]
ATGAAAAATCTATCCTATGATCGGATCTATAAATCACAAGAATATTTAGCATCCCTGGGCAGGGTGAACTATCGGTCTCT
GTTTGGCAGTTACAGCTTAACTATCAGCGATACCGTGTTTGCGATGGTGGCTGATGGTGAGTTATATCTGCGCGCCTGTG
AACAAAGCGTCCAGTATTGCGTCAAACATACCCCCCGCTGGTTAACGTTTATGAAAAAAGGGCGGTTGGTCATGCTGAAC
TATTACCGGGTAGATGAAAGTTTGTGGCAGGACCAGCAGCAATTAATTCGCCTGTCGCGTTATTCGCTGGATGCAGCTCT
TAAAGAGAAGAAGAGCCTTGGCAGGAAGTATCGCTTAAGAGATCTGCCTAACATTACTTATCATCTTGAGTCGTTGCTCA
ATGAGGCGGGTATTAAAGATGTCAGCACGTTGCGTATTTTGGGGGCAAAAATGTGCTGGTTAAGGTTAAAGCAGATGAAT
CAGCACATTACCGTGAAAATACTCTATTTGCTGGAAGGCGCGGTGCAGGATATTCATGAAGCAGCACTCCCGGTGGTCCG
TCGCCAGGAGCTTGCTGCATGGGTGGAGTCTCTTACACCAGATCGGGCGTTGCTGGCGTCATTTGATTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.856

100

0.699