Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HVY60_RS14685 Genome accession   NZ_CP057353
Coordinates   3060046..3060660 (-) Length   204 a.a.
NCBI ID   WP_117341734.1    Uniprot ID   A0AAU7GM83
Organism   Citrobacter freundii strain RHB29-C07     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3055046..3065660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HVY60_RS14670 (HVY60_14670) helD 3055270..3057324 (-) 2055 WP_181694848.1 DNA helicase IV -
  HVY60_RS14675 (HVY60_14675) - 3057450..3057896 (+) 447 WP_096757638.1 YccF domain-containing protein -
  HVY60_RS14680 (HVY60_14680) yccS 3057915..3060068 (+) 2154 WP_181694849.1 YccS family putative transporter -
  HVY60_RS14685 (HVY60_14685) sxy/tfoX 3060046..3060660 (-) 615 WP_117341734.1 TfoX/Sxy family DNA transformation protein Regulator
  HVY60_RS14690 (HVY60_14690) sulA 3060877..3061386 (+) 510 WP_096757640.1 SOS-induced cell division inhibitor SulA -
  HVY60_RS14695 (HVY60_14695) ompA 3061742..3062800 (+) 1059 WP_115259970.1 porin OmpA -
  HVY60_RS14700 (HVY60_14700) matP 3062899..3063351 (-) 453 WP_096757641.1 macrodomain Ter protein MatP -
  HVY60_RS14705 (HVY60_14705) - 3063537..3065297 (+) 1761 WP_181694850.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23257.84 Da        Isoelectric Point: 9.1904

>NTDB_id=461680 HVY60_RS14685 WP_117341734.1 3060046..3060660(-) (sxy/tfoX) [Citrobacter freundii strain RHB29-C07]
MKNLSYARIYKSQEYLASLGTISYRSLFGSYSLTVGDTVFAMVADGELYLRACEQSVQYCVKHSPVWLTFMKRGRPVILN
YYQVNDALWRNHPQLVSLSRYSLDAAVKEKQTRVSQHRLRELPNISFHLETLLSEAGINDESTLRTLGAQMCWLKLLQIN
PSLTVKILYALEGAISGIHEAALPTVRRRELVEWVSSLKPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=461680 HVY60_RS14685 WP_117341734.1 3060046..3060660(-) (sxy/tfoX) [Citrobacter freundii strain RHB29-C07]
ATGAAAAACCTCTCTTATGCCAGGATCTATAAATCACAAGAATATTTGGCCTCTTTAGGTACAATTAGCTACCGCTCTTT
ATTTGGCAGTTATAGCCTGACGGTGGGCGATACGGTCTTTGCAATGGTTGCCGACGGTGAGTTATACCTGCGGGCCTGTG
AGCAAAGCGTACAGTACTGTGTCAAACATTCCCCGGTCTGGTTGACGTTTATGAAGCGGGGACGTCCCGTGATACTCAAC
TATTATCAAGTTAATGATGCGCTGTGGCGAAACCATCCGCAGTTGGTGTCTTTATCACGATATTCGCTGGATGCCGCAGT
AAAAGAAAAGCAGACGCGTGTTTCGCAACACCGGTTACGGGAACTGCCGAACATTTCCTTTCATCTGGAGACCCTACTGA
GTGAAGCCGGGATTAACGATGAGAGTACATTACGCACCCTGGGTGCTCAAATGTGTTGGCTAAAGCTTTTGCAAATTAAC
CCATCGCTGACAGTGAAAATTCTTTATGCGCTTGAGGGTGCAATCAGTGGGATACATGAAGCTGCACTCCCGACGGTTCG
CCGCCGGGAGTTGGTTGAGTGGGTGAGTTCACTTAAGCCTGAACCGGGTTACTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.608

100

0.696