Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   JNN34_RS08630 Genome accession   NZ_CP068803
Coordinates   1817552..1818979 (-) Length   475 a.a.
NCBI ID   WP_000980567.1    Uniprot ID   -
Organism   Escherichia coli strain RIVM_C018404     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1812552..1823979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNN34_RS08600 (JNN34_08600) yeeZ 1812607..1813431 (+) 825 WP_000754749.1 SDR family oxidoreductase -
  JNN34_RS08605 (JNN34_08605) yeeY 1813477..1814406 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  JNN34_RS08610 (JNN34_08610) yoeI 1814621..1814683 (+) 63 WP_010723108.1 membrane protein YoeI -
  JNN34_RS08615 (JNN34_08615) plaP 1814673..1816031 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  JNN34_RS08620 (JNN34_08620) tsuA 1816210..1817268 (+) 1059 WP_000492321.1 thiosulfate utilization transporter TsuA/YeeE -
  JNN34_RS08625 (JNN34_08625) tsuB 1817282..1817509 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  JNN34_RS08630 (JNN34_08630) sbcB 1817552..1818979 (-) 1428 WP_000980567.1 exodeoxyribonuclease I Machinery gene
  JNN34_RS08635 (JNN34_08635) dacD 1819188..1820354 (+) 1167 WP_001310935.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  JNN34_RS08640 (JNN34_08640) sbmC 1820473..1820946 (+) 474 WP_086732420.1 DNA gyrase inhibitor SbmC -
  JNN34_RS08645 (JNN34_08645) yeeA 1821144..1822202 (+) 1059 WP_001200905.1 FUSC family protein -
  JNN34_RS08650 (JNN34_08650) tmaR 1822374..1822703 (+) 330 WP_000450409.1 DUF496 family protein -
  JNN34_RS08655 (JNN34_08655) - 1822804..1822986 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  JNN34_RS08660 (JNN34_08660) - 1823440..1823811 (-) 372 WP_001295631.1 IS110 family transposase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54503.77 Da        Isoelectric Point: 5.4720

>NTDB_id=461595 JNN34_RS08630 WP_000980567.1 1817552..1818979(-) (sbcB) [Escherichia coli strain RIVM_C018404]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQIFTSEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=461595 JNN34_RS08630 WP_000980567.1 1817552..1818979(-) (sbcB) [Escherichia coli strain RIVM_C018404]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAACAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGATCTTCACGTCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581