Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   JNN40_RS00535 Genome accession   NZ_CP068802
Coordinates   111678..113105 (-) Length   475 a.a.
NCBI ID   WP_000980538.1    Uniprot ID   -
Organism   Escherichia coli strain RIVM_C018249     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 106678..118105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNN40_RS00500 (JNN40_00500) hisL 107262..107312 (-) 51 WP_001364200.1 his operon leader peptide -
  JNN40_RS00505 (JNN40_00505) yefM 107595..107846 (+) 252 WP_001259257.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  JNN40_RS00510 (JNN40_00510) yoeB 107843..108097 (+) 255 WP_000767829.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  JNN40_RS00515 (JNN40_00515) yeeZ 108180..109004 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  JNN40_RS00520 (JNN40_00520) yeeY 109050..109979 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  JNN40_RS00525 (JNN40_00525) yoeI 110194..110256 (+) 63 WP_010723108.1 membrane protein YoeI -
  JNN40_RS00530 (JNN40_00530) plaP 110246..111604 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  JNN40_RS00535 (JNN40_00535) sbcB 111678..113105 (-) 1428 WP_000980538.1 exodeoxyribonuclease I Machinery gene
  JNN40_RS00540 (JNN40_00540) dacD 113314..114480 (+) 1167 WP_000830161.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  JNN40_RS00545 (JNN40_00545) sbmC 114599..115069 (+) 471 WP_001105396.1 DNA gyrase inhibitor SbmC -
  JNN40_RS00550 (JNN40_00550) yeeA 115269..116327 (+) 1059 WP_001200892.1 FUSC family protein -
  JNN40_RS00555 (JNN40_00555) tmaR 116499..116828 (+) 330 WP_000450409.1 DUF496 family protein -
  JNN40_RS00560 (JNN40_00560) - 116929..117225 (-) 297 Protein_113 EutP/PduV family microcompartment system protein -
  JNN40_RS00565 (JNN40_00565) - 117228..117563 (+) 336 WP_032159232.1 hypothetical protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54456.72 Da        Isoelectric Point: 5.3476

>NTDB_id=461482 JNN40_RS00535 WP_000980538.1 111678..113105(-) (sbcB) [Escherichia coli strain RIVM_C018249]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=461482 JNN40_RS00535 WP_000980538.1 111678..113105(-) (sbcB) [Escherichia coli strain RIVM_C018249]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGCTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACAAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTCTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583