Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HVZ39_RS16315 Genome accession   NZ_CP057147
Coordinates   3321258..3321872 (-) Length   204 a.a.
NCBI ID   WP_016152483.1    Uniprot ID   R8X084
Organism   Citrobacter sp. RHB35-C21     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3316258..3326872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HVZ39_RS16300 (HVZ39_16305) helD 3316482..3318536 (-) 2055 WP_019076416.1 DNA helicase IV -
  HVZ39_RS16305 (HVZ39_16310) - 3318662..3319108 (+) 447 WP_016152485.1 YccF domain-containing protein -
  HVZ39_RS16310 (HVZ39_16315) yccS 3319127..3321280 (+) 2154 WP_029139472.1 YccS family putative transporter -
  HVZ39_RS16315 (HVZ39_16320) sxy/tfoX 3321258..3321872 (-) 615 WP_016152483.1 TfoX/Sxy family DNA transformation protein Regulator
  HVZ39_RS16320 (HVZ39_16325) sulA 3322089..3322598 (+) 510 WP_049271473.1 SOS-induced cell division inhibitor SulA -
  HVZ39_RS16325 (HVZ39_16330) ompA 3322956..3324014 (+) 1059 WP_016156137.1 porin OmpA -
  HVZ39_RS16330 (HVZ39_16335) matP 3324113..3324565 (-) 453 WP_016152480.1 macrodomain Ter protein MatP -
  HVZ39_RS16335 (HVZ39_16340) - 3324751..3326511 (+) 1761 WP_016152479.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23168.52 Da        Isoelectric Point: 8.6113

>NTDB_id=461366 HVZ39_RS16315 WP_016152483.1 3321258..3321872(-) (sxy/tfoX) [Citrobacter sp. RHB35-C21]
MKEKSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVASGELYLRACEQSAQYCVKNSPVWLTFIKRGRPVVLN
YYQVNDTLWQNQQQLVSLSQFSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTLRSLGAQMCWLKLRQNN
PALTVKILYALEGAVDGVHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=461366 HVZ39_RS16315 WP_016152483.1 3321258..3321872(-) (sxy/tfoX) [Citrobacter sp. RHB35-C21]
ATGAAAGAAAAGTCTTATGCAAGAATCTATAAATCACAAGAATATCTGGCTTCTCTGGGAACAATTCACTACCGCTCACT
GTTTGGCGGCTATAGTCTGACGGTTGGTGATACGGTCTTTGCCATGGTTGCCAGCGGTGAGTTATATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTACTGTGTAAAAAATTCTCCTGTCTGGCTAACATTTATCAAGCGCGGGCGTCCGGTTGTACTCAAT
TATTACCAGGTGAACGATACCCTGTGGCAAAACCAGCAGCAGTTAGTATCGCTATCACAATTTTCACTCGATGCAGCCGT
TAAGGAAAAACAGAGTCGCTTTGCACAACATCGCCTGCGGGAATTACCGAATATGACGTTTCATCTGGAGACCTTGCTAA
ATGAAGCAGGAATTAAGGATGAGGGGACATTGCGATCGCTGGGAGCTCAGATGTGCTGGTTGAAACTTCGGCAAAATAAC
CCTGCCTTAACGGTAAAAATACTCTATGCCCTTGAAGGGGCGGTTGACGGGGTGCATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8X084

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.154

98.529

0.681