Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HVZ46_RS07940 Genome accession   NZ_CP057136
Coordinates   1714390..1715004 (+) Length   204 a.a.
NCBI ID   WP_181619032.1    Uniprot ID   -
Organism   Citrobacter freundii strain RHB36-C06     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1709390..1720004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HVZ46_RS07920 (HVZ46_07925) - 1709765..1711525 (-) 1761 WP_181619030.1 Lon protease family protein -
  HVZ46_RS07925 (HVZ46_07930) matP 1711711..1712163 (+) 453 WP_096757641.1 macrodomain Ter protein MatP -
  HVZ46_RS07930 (HVZ46_07935) ompA 1712262..1713308 (-) 1047 WP_181490379.1 porin OmpA -
  HVZ46_RS07935 (HVZ46_07940) sulA 1713664..1714173 (-) 510 WP_181619031.1 SOS-induced cell division inhibitor SulA -
  HVZ46_RS07940 (HVZ46_07945) sxy/tfoX 1714390..1715004 (+) 615 WP_181619032.1 TfoX/Sxy family DNA transformation protein Regulator
  HVZ46_RS07945 (HVZ46_07950) yccS 1714973..1717135 (-) 2163 WP_181619033.1 YccS family putative transporter -
  HVZ46_RS07950 (HVZ46_07955) - 1717154..1717600 (-) 447 WP_096757638.1 YccF domain-containing protein -
  HVZ46_RS07955 (HVZ46_07960) helD 1717726..1719780 (+) 2055 WP_181619034.1 DNA helicase IV -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23173.86 Da        Isoelectric Point: 9.2179

>NTDB_id=461334 HVZ46_RS07940 WP_181619032.1 1714390..1715004(+) (sxy/tfoX) [Citrobacter freundii strain RHB36-C06]
MKNLSYARIYKSQEYLASLGTISYRSLFGSYSLTVGDTVFAMVANGELYLRACEQSVQYCVKHSPVWLTFMKRGRPVILN
YYQVNDALWRNHPQLVSLSRYSLDAAVKEKQMRVSQHRLRELPNISFHLETLLSEAGIKDEGTLRTLGAQMCWLKLLQIN
PSLTVKILYALEGAISGIHEAALPAVRRQELVEWVSSLVPELGH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=461334 HVZ46_RS07940 WP_181619032.1 1714390..1715004(+) (sxy/tfoX) [Citrobacter freundii strain RHB36-C06]
ATGAAAAACCTCTCTTATGCCAGGATCTATAAATCACAAGAATATTTGGCCTCTTTAGGTACAATTAGCTACCGCTCTTT
ATTTGGCAGTTATAGCTTGACGGTGGGCGATACGGTCTTTGCCATGGTCGCCAACGGTGAGTTATACCTGCGGGCCTGTG
AGCAAAGCGTACAGTACTGTGTCAAACATTCCCCGGTCTGGTTGACGTTTATGAAGCGGGGACGTCCCGTGATACTCAAC
TATTATCAAGTTAATGATGCGCTGTGGCGAAACCATCCGCAGTTGGTGTCTTTATCACGATATTCGCTGGATGCCGCAGT
AAAAGAAAAACAGATGCGTGTTTCGCAACACCGGTTACGGGAACTGCCGAACATTTCCTTTCACCTGGAGACCCTGCTGA
GTGAAGCCGGAATTAAAGATGAGGGTACATTACGTACACTGGGGGCTCAAATGTGCTGGCTGAAGCTTTTGCAAATTAAC
CCATCGCTGACGGTGAAAATTCTTTATGCGCTTGAGGGTGCAATCAGTGGGATACATGAAGCCGCGCTCCCGGCGGTTCG
TCGCCAGGAGCTGGTTGAGTGGGTCAGTTCACTGGTGCCTGAACTGGGGCATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

70.647

98.529

0.696