Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HVZ52_RS14455 Genome accession   NZ_CP057125
Coordinates   3001421..3002035 (-) Length   204 a.a.
NCBI ID   WP_016152483.1    Uniprot ID   R8X084
Organism   Citrobacter sp. RHB36-C18     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2996421..3007035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HVZ52_RS14440 (HVZ52_14435) helD 2996645..2998699 (-) 2055 WP_181598376.1 DNA helicase IV -
  HVZ52_RS14445 (HVZ52_14440) - 2998825..2999271 (+) 447 WP_016152485.1 YccF domain-containing protein -
  HVZ52_RS14450 (HVZ52_14445) yccS 2999290..3001443 (+) 2154 WP_181598377.1 YccS family putative transporter -
  HVZ52_RS14455 (HVZ52_14450) sxy/tfoX 3001421..3002035 (-) 615 WP_016152483.1 TfoX/Sxy family DNA transformation protein Regulator
  HVZ52_RS14460 (HVZ52_14455) sulA 3002252..3002761 (+) 510 WP_019076414.1 SOS-induced cell division inhibitor SulA -
  HVZ52_RS14465 (HVZ52_14460) ompA 3003119..3004177 (+) 1059 WP_016156137.1 porin OmpA -
  HVZ52_RS14470 (HVZ52_14465) matP 3004276..3004728 (-) 453 WP_016152480.1 macrodomain Ter protein MatP -
  HVZ52_RS14475 (HVZ52_14470) - 3004914..3006674 (+) 1761 WP_049271474.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23168.52 Da        Isoelectric Point: 8.6113

>NTDB_id=461321 HVZ52_RS14455 WP_016152483.1 3001421..3002035(-) (sxy/tfoX) [Citrobacter sp. RHB36-C18]
MKEKSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVASGELYLRACEQSAQYCVKNSPVWLTFIKRGRPVVLN
YYQVNDTLWQNQQQLVSLSQFSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTLRSLGAQMCWLKLRQNN
PALTVKILYALEGAVDGVHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=461321 HVZ52_RS14455 WP_016152483.1 3001421..3002035(-) (sxy/tfoX) [Citrobacter sp. RHB36-C18]
ATGAAAGAAAAGTCTTATGCAAGAATCTATAAATCACAAGAATATCTGGCTTCTCTGGGAACAATTCACTACCGCTCACT
GTTTGGCGGCTATAGTCTGACGGTTGGTGATACGGTCTTTGCCATGGTAGCCAGCGGTGAGTTATATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTACTGTGTAAAAAATTCTCCTGTCTGGCTAACATTTATCAAGCGCGGGCGACCGGTTGTACTCAAT
TATTACCAGGTGAACGATACCCTGTGGCAGAACCAGCAGCAGTTAGTATCGCTATCACAATTTTCACTCGATGCAGCCGT
TAAGGAAAAACAGAGTCGCTTTGCACAACATCGCCTGCGGGAATTACCGAATATGACGTTTCATTTGGAGACCTTGCTAA
ATGAAGCAGGAATTAAGGATGAGGGGACATTGCGATCGCTGGGAGCTCAGATGTGCTGGTTGAAACTTCGGCAAAATAAC
CCTGCCTTAACGGTAAAAATACTCTATGCCCTTGAAGGAGCGGTTGACGGGGTGCATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTGAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8X084

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.154

98.529

0.681