Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HVZ66_RS08345 Genome accession   NZ_CP057104
Coordinates   1755072..1755701 (+) Length   209 a.a.
NCBI ID   WP_000793790.1    Uniprot ID   A0A7L6ZPA1
Organism   Escherichia fergusonii strain RHB38-C01     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1750072..1760701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HVZ66_RS08325 (HVZ66_08325) - 1750484..1752244 (-) 1761 WP_181591390.1 AAA family ATPase -
  HVZ66_RS08330 (HVZ66_08330) matP 1752429..1752884 (+) 456 WP_000877154.1 macrodomain Ter protein MatP -
  HVZ66_RS08335 (HVZ66_08335) ompA 1752940..1753989 (-) 1050 WP_181591391.1 porin OmpA -
  HVZ66_RS08340 (HVZ66_08340) sulA 1754346..1754855 (-) 510 WP_000288735.1 SOS-induced cell division inhibitor SulA -
  HVZ66_RS08345 (HVZ66_08345) sxy/tfoX 1755072..1755701 (+) 630 WP_000793790.1 TfoX/Sxy family DNA transformation protein Regulator
  HVZ66_RS08350 (HVZ66_08350) yccS 1755664..1757817 (-) 2154 WP_032243386.1 YccS family putative transporter -
  HVZ66_RS08355 (HVZ66_08355) - 1757837..1758283 (-) 447 WP_002431615.1 YccF domain-containing protein -
  HVZ66_RS08360 (HVZ66_08360) helD 1758406..1760460 (+) 2055 WP_181591392.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24359.36 Da        Isoelectric Point: 9.5059

>NTDB_id=461294 HVZ66_RS08345 WP_000793790.1 1755072..1755701(+) (sxy/tfoX) [Escherichia fergusonii strain RHB38-C01]
MKNLSYDRIYKSQEYLASLGRVNYRSLFGSYSLTISDTVFAMVADGELYLRACEQSVQYCVKHTPRWLTFMKKGRLVMLN
YYRVDESLWQDQQQLIRLSRYSLDAALKEKKSLGRKYRLRDLPNITYHLESLLNEAGIKDVSTLRILGAKMCWLRLKQMN
QHITVKILYLLEGAVQDIHEAALPVVRRQELAVWVESLTPDLALLASFD

Nucleotide


Download         Length: 630 bp        

>NTDB_id=461294 HVZ66_RS08345 WP_000793790.1 1755072..1755701(+) (sxy/tfoX) [Escherichia fergusonii strain RHB38-C01]
ATGAAAAATCTATCCTATGATCGGATCTATAAATCACAAGAATATTTAGCATCCCTGGGCAGGGTGAACTATCGGTCTCT
GTTTGGCAGTTACAGCTTAACTATCAGCGATACCGTGTTTGCGATGGTGGCTGATGGTGAGTTATATCTGCGCGCCTGTG
AACAAAGCGTCCAGTATTGCGTCAAACATACCCCCCGCTGGTTAACGTTTATGAAAAAAGGGCGGTTGGTCATGCTGAAC
TATTACCGGGTAGATGAAAGTTTGTGGCAGGACCAGCAGCAATTAATTCGCCTGTCGCGTTATTCGCTGGATGCAGCTCT
TAAAGAGAAGAAGAGCCTTGGGAGGAAGTATCGCTTAAGAGATCTGCCTAACATTACTTATCATCTTGAGTCGTTGCTTA
ATGAGGCGGGTATTAAAGATGTCAGCACGTTGCGTATTTTGGGGGCAAAAATGTGCTGGTTAAGGTTAAAGCAGATGAAT
CAGCACATTACCGTGAAAATACTCTATTTGCTGGAAGGCGCGGTGCAGGATATTCATGAAGCAGCGCTCCCGGTGGTCCG
TCGCCAGGAGCTTGCTGTATGGGTGGAGTCTCTTACGCCAGATCTGGCGTTGCTGGCGTCATTTGATTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L6ZPA1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.856

100

0.699