Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   JNN46_RS09365 Genome accession   NZ_CP068799
Coordinates   1988814..1990241 (-) Length   475 a.a.
NCBI ID   WP_000980604.1    Uniprot ID   -
Organism   Escherichia coli strain RIVM_C017887     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1983814..1995241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNN46_RS09330 (JNN46_09330) hisL 1984398..1984448 (-) 51 WP_001364200.1 his operon leader peptide -
  JNN46_RS09335 (JNN46_09335) yefM 1984731..1984982 (+) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  JNN46_RS09340 (JNN46_09340) yoeB 1984979..1985233 (+) 255 WP_000767822.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  JNN46_RS09345 (JNN46_09345) yeeZ 1985316..1986140 (+) 825 WP_202847282.1 SDR family oxidoreductase -
  JNN46_RS09350 (JNN46_09350) yeeY 1986186..1987115 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  JNN46_RS09355 (JNN46_09355) yoeI 1987330..1987392 (+) 63 WP_010723108.1 membrane protein YoeI -
  JNN46_RS09360 (JNN46_09360) plaP 1987382..1988740 (+) 1359 WP_000019194.1 putrescine/proton symporter PlaP -
  JNN46_RS09365 (JNN46_09365) sbcB 1988814..1990241 (-) 1428 WP_000980604.1 exodeoxyribonuclease I Machinery gene
  JNN46_RS09370 (JNN46_09370) dacD 1990450..1991616 (+) 1167 WP_001297905.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  JNN46_RS09375 (JNN46_09375) sbmC 1991735..1992208 (+) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  JNN46_RS09380 (JNN46_09380) yeeA 1992406..1993464 (+) 1059 WP_001200890.1 FUSC family protein -
  JNN46_RS09385 (JNN46_09385) tmaR 1993636..1993965 (+) 330 WP_000450409.1 DUF496 family protein -
  JNN46_RS25470 (JNN46_09390) - 1994066..1994248 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  JNN46_RS25195 - 1994368..1994448 (+) 81 WP_023441679.1 hypothetical protein -
  JNN46_RS09400 (JNN46_09400) - 1994737..1994817 (-) 81 Protein_1863 hypothetical protein -
  JNN46_RS09405 (JNN46_09405) yeeW 1994863..1995057 (-) 195 WP_000988601.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54442.73 Da        Isoelectric Point: 5.4720

>NTDB_id=461260 JNN46_RS09365 WP_000980604.1 1988814..1990241(-) (sbcB) [Escherichia coli strain RIVM_C017887]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=461260 JNN46_RS09365 WP_000980604.1 1988814..1990241(-) (sbcB) [Escherichia coli strain RIVM_C017887]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGAGAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583