Detailed information NTG0461247

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JNN46_RS05510
• Genome accession: NZ_CP068799
• Coordinates: 1171690..1172682 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain RIVM_C017887
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1166690..1177682

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JNN46_RS05480 (JNN46_05480)	ispD	1166751..1167461 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
JNN46_RS05485 (JNN46_05485)	ispF	1167461..1167940 (+)	480	WP_001219252.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JNN46_RS05490 (JNN46_05490)	truD	1167937..1168986 (+)	1050	WP_000568931.1	tRNA pseudouridine(13) synthase TruD	-
JNN46_RS05495 (JNN46_05495)	surE	1168967..1169728 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
JNN46_RS05500 (JNN46_05500)	pcm	1169722..1170348 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
JNN46_RS05505 (JNN46_05505)	nlpD	1170533..1171627 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
JNN46_RS05510 (JNN46_05510)	rpoS	1171690..1172682 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
JNN46_RS05515 (JNN46_05515)	-	1172860..1173411 (-)	552	WP_001179442.1	flavodoxin family protein	-
JNN46_RS05520 (JNN46_05520)	-	1173636..1174679 (+)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
JNN46_RS05525 (JNN46_05525)	ygbN	1174822..1176186 (-)	1365	WP_000104433.1	GntP family transporter	-
JNN46_RS05530 (JNN46_05530)	ygbM	1176275..1177051 (-)	777	WP_001136928.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=461247 JNN46_RS05510 WP_000081550.1 1171690..1172682(+) (rpoS) [Escherichia coli strain RIVM_C017887]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=461247 JNN46_RS05510 WP_000081550.1 1171690..1172682(+) (rpoS) [Escherichia coli strain RIVM_C017887]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGTAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGTTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715