Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   LILO_RS10295 Genome accession   NC_020450
Coordinates   2147717..2148487 (-) Length   256 a.a.
NCBI ID   WP_004254655.1    Uniprot ID   Q9CE51
Organism   Lactococcus lactis subsp. lactis IO-1     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2142717..2153487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LILO_RS12140 (lilo_1979) - 2142805..2142966 (-) 162 WP_015427104.1 hypothetical protein -
  LILO_RS10270 (lilo_1980) - 2143651..2144574 (-) 924 WP_004254664.1 peptidase U32 family protein -
  LILO_RS10275 (lilo_1981) - 2144795..2145076 (+) 282 WP_004254660.1 DUF3270 domain-containing protein -
  LILO_RS10280 (lilo_1982) - 2145101..2145922 (-) 822 WP_015427105.1 putative RNA methyltransferase -
  LILO_RS10285 (lilo_1983) - 2146040..2146666 (+) 627 WP_015427106.1 copper homeostasis protein CutC -
  LILO_RS10290 (lilo_1984) - 2146705..2147724 (-) 1020 WP_015427107.1 ABC transporter permease -
  LILO_RS10295 (lilo_1985) pptA 2147717..2148487 (-) 771 WP_004254655.1 ABC transporter ATP-binding protein Regulator
  LILO_RS10300 (lilo_1986) - 2148506..2150311 (-) 1806 WP_042230629.1 glycerophosphoryl diester phosphodiesterase membrane domain-containing protein -
  LILO_RS10305 (lilo_1987) - 2150590..2150991 (+) 402 WP_004254651.1 HIT family protein -
  LILO_RS10310 (lilo_1988) - 2151004..2151225 (+) 222 WP_010906257.1 hypothetical protein -
  LILO_RS10315 (lilo_1989) - 2151237..2151581 (-) 345 WP_015427109.1 hypothetical protein -
  LILO_RS10320 (lilo_1990) rplA 2151659..2152348 (-) 690 WP_004254644.1 50S ribosomal protein L1 -
  LILO_RS10325 (lilo_1991) rplK 2152687..2153112 (-) 426 WP_004254643.1 50S ribosomal protein L11 -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28472.99 Da        Isoelectric Point: 4.5320

>NTDB_id=46120 LILO_RS10295 WP_004254655.1 2147717..2148487(-) (pptA) [Lactococcus lactis subsp. lactis IO-1]
MLKVTNLTGGYLGHPVLKDLNFEIKEGELVGLIGLNGAGKSTTIQEIIGLLTPYSGQIELDGLTLQQDLEGYRRKIGFIP
ETPSLYEELTLREHIEVTALAYGISVDLAFERAEKLLETFRLSDKLDWFPVNFSKGMKQKVMIICAFLVEPSLYIVDEPF
MGLDPLAIQDLIDLMIDMKKSGSSILMSTHILSTAEKFCDKFIVLHEGQVVAFGTVEELRTQFNQPKASLDEIYLALTKG
NIPNSKEVVEAGKSNE

Nucleotide


Download         Length: 771 bp        

>NTDB_id=46120 LILO_RS10295 WP_004254655.1 2147717..2148487(-) (pptA) [Lactococcus lactis subsp. lactis IO-1]
ATGTTAAAAGTAACAAATCTAACAGGTGGCTATTTGGGGCATCCTGTCTTAAAAGACCTTAATTTTGAAATTAAAGAAGG
TGAGTTAGTTGGACTCATTGGTTTAAATGGGGCAGGAAAATCGACAACAATTCAAGAAATTATTGGACTTTTGACTCCTT
ATTCTGGACAAATTGAATTAGACGGCTTAACTTTACAACAAGATTTAGAAGGCTATCGTAGAAAAATTGGTTTCATTCCA
GAAACACCAAGTTTATATGAAGAATTGACTTTGCGTGAACATATTGAAGTGACAGCTTTAGCTTACGGGATTTCTGTTGA
CTTGGCTTTTGAACGTGCTGAAAAATTATTAGAAACTTTCCGCTTGAGTGATAAATTAGATTGGTTCCCTGTGAATTTTT
CAAAAGGGATGAAACAAAAAGTGATGATTATCTGCGCATTCTTAGTGGAACCTTCGCTCTATATTGTTGATGAACCTTTT
ATGGGACTTGATCCGCTTGCGATTCAGGATTTGATTGACTTGATGATTGACATGAAAAAATCAGGAAGTTCGATTTTAAT
GAGTACACATATCTTGTCCACAGCTGAAAAATTCTGTGATAAATTTATTGTTTTGCATGAAGGTCAAGTTGTTGCTTTTG
GAACAGTAGAAGAATTACGGACTCAATTTAATCAGCCTAAGGCAAGTTTAGATGAAATTTATCTTGCCTTAACAAAAGGA
AATATTCCAAACTCTAAAGAAGTTGTAGAGGCAGGAAAGTCAAATGAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CE51

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

67.355

94.531

0.637
  pptA Streptococcus thermophilus LMD-9

66.942

94.531

0.633

Multiple sequence alignment