Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   JNN38_RS09845 Genome accession   NZ_CP068796
Coordinates   2044220..2045644 (-) Length   474 a.a.
NCBI ID   WP_000148130.1    Uniprot ID   -
Organism   Escherichia coli strain RIVM_C012087     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2039220..2050644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNN38_RS09815 (JNN38_09815) yeeZ 2039275..2040099 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  JNN38_RS09820 (JNN38_09820) yeeY 2040145..2041074 (+) 930 WP_000803363.1 LysR substrate-binding domain-containing protein -
  JNN38_RS09825 (JNN38_09825) yoeI 2041289..2041351 (+) 63 WP_010723108.1 membrane protein YoeI -
  JNN38_RS09830 (JNN38_09830) plaP 2041341..2042699 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  JNN38_RS09835 (JNN38_09835) tsuA 2042878..2043936 (+) 1059 WP_000492348.1 thiosulfate utilization transporter TsuA/YeeE -
  JNN38_RS09840 (JNN38_09840) tsuB 2043950..2044177 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  JNN38_RS09845 (JNN38_09845) sbcB 2044220..2045644 (-) 1425 WP_000148130.1 exodeoxyribonuclease I Machinery gene
  JNN38_RS09850 (JNN38_09850) - 2045826..2047004 (+) 1179 WP_166742462.1 site-specific integrase -
  JNN38_RS09855 (JNN38_09855) - 2046985..2047176 (-) 192 WP_000132739.1 AlpA family phage regulatory protein -
  JNN38_RS09860 (JNN38_09860) yfdT 2047265..2047570 (-) 306 WP_000627693.1 protein YfdT -
  JNN38_RS09865 (JNN38_09865) - 2047570..2047932 (-) 363 WP_001242744.1 hypothetical protein -
  JNN38_RS09870 (JNN38_09870) yfdR 2047923..2048459 (-) 537 WP_000008235.1 5'-deoxynucleotidase -
  JNN38_RS25110 - 2048541..2048860 (-) 320 Protein_1957 hypothetical protein -
  JNN38_RS09875 (JNN38_09875) - 2048973..2049260 (+) 288 WP_000141754.1 hypothetical protein -
  JNN38_RS09880 (JNN38_09880) - 2049173..2049481 (+) 309 Protein_1959 phage tail protein -
  JNN38_RS09885 (JNN38_09885) - 2049481..2050074 (+) 594 WP_000805577.1 tail fiber assembly protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54323.60 Da        Isoelectric Point: 5.6054

>NTDB_id=461176 JNN38_RS09845 WP_000148130.1 2044220..2045644(-) (sbcB) [Escherichia coli strain RIVM_C012087]
MTGTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
AAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDAD
RLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAQEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=461176 JNN38_RS09845 WP_000148130.1 2044220..2045644(-) (sbcB) [Escherichia coli strain RIVM_C012087]
ATGACAGGCACAGATAAACAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCGCGG
ATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAACGAA
GCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGATGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATAAAC
ACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGTGGC
AATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGACAT
TTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACGCCG
CCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCCGAC
CGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGTGGT
GGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTGACG
CCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGATAAA
CGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTGGCT
TGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGTATG
CCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGCAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(12-187)

Exonuclease C-terminal (ExoI_SH3)

(211-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

99.156

0.584