Detailed information NTG0046113

Bioinformatically predicted

Overview

• Name: recQ
• Type: Machinery gene
• Locus tag: LILO_RS09265
• Genome accession: NC_020450
• Coordinates: 1949688..1951466 (+)
• Length: 592 a.a.
• NCBI ID: WP_015426964.1
• Uniprot ID: -
• Organism: Lactococcus lactis subsp. lactis IO-1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1944688..1956466

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LILO_RS09245 (lilo_1788)	-	1944776..1946449 (-)	1674	WP_015426961.1	polysaccharide biosynthesis protein	-
LILO_RS09250 (lilo_1789)	-	1946660..1948111 (+)	1452	WP_015426962.1	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase	-
LILO_RS09255	-	1948189..1948455 (-)	267	WP_225513408.1	hypothetical protein	-
LILO_RS09260 (lilo_1790)	adhP	1948470..1949492 (-)	1023	WP_042230580.1	alcohol dehydrogenase AdhP	-
LILO_RS09265 (lilo_1791)	recQ	1949688..1951466 (+)	1779	WP_015426964.1	DNA helicase RecQ	Machinery gene
LILO_RS09270 (lilo_1792)	yjeM	1951502..1953028 (-)	1527	WP_015426965.1	glutamate/gamma-aminobutyrate family transporter YjeM	-
LILO_RS09275 (lilo_1793)	pepT	1953308..1954549 (-)	1242	WP_015426966.1	peptidase T	-
LILO_RS09280 (lilo_1794)	-	1954578..1955375 (-)	798	WP_015426967.1	DUF1803 domain-containing protein	-
LILO_RS09285 (lilo_1795)	-	1955375..1956319 (-)	945	WP_015426968.1	manganese-dependent inorganic pyrophosphatase	-

Sequence

Protein

• Length: 592 a.a.
• Molecular weight: 66927.86 Da
• Isoelectric Point: 6.2103

>NTDB_id=46113 LILO_RS09265 WP_015426964.1 1949688..1951466(+) (recQ) [Lactococcus lactis subsp. lactis IO-1]
MNLEAKLKEIFGYDNFRNGQKQIIEQVLDGQATLGILPTGAGKSICYQLPALIQPGLTLVISPLISLMKDQVDQLNIAGI
PATFINSTLEDSESYQRMRQVENGEIKLLFVAPERFSLDYFNVFLQKLPIDLVAIDEAHCISQWGHDFRPSYVDFASHLQ
YLPTNPTVLALTATATPKVADDIQKLLSISPSHTIKTGFLRENLRFEVVKGMDKRTFLKNYLKNQESEAAGIIYASTRKE
VEEICEWLNHNHFKAVRYHAGLSEQERQMNQELFLFDEVPIMVATNAFGMGINKPNVRFVIHYALPATIESYYQEAGRAG
RDGLESDAILLFSPNDLRIRNFLIEQSEGDEAHKEHEYEKLRQMQAYTSAETCLQRYILQYFGDEGEDCKKCSNCLDERE
LLDITIDAQKVLSCVVRMGERFGKTAVAQVLIGSKNKNIAKWNFESLSTFGIMKNHSQKTVGELIDFLSAEGYLNITSGK
FPLLLLSAQGLKVLKGQIKVYRKASLIIESKTKISHHFDEECFASIRALRLELAKEEGVPPFMIFSDSALKEMAQVLPDS
PSQFLQISGVGPVKLEKYGRLFIDKISEYKKS

Nucleotide

• Length: 1779 bp

>NTDB_id=46113 LILO_RS09265 WP_015426964.1 1949688..1951466(+) (recQ) [Lactococcus lactis subsp. lactis IO-1]
ATGAATTTAGAAGCTAAATTAAAAGAAATTTTTGGTTATGACAATTTCCGAAATGGTCAGAAACAAATTATTGAACAAGT
CCTAGATGGACAAGCCACTCTTGGTATTTTACCCACAGGAGCTGGAAAATCAATCTGCTATCAGTTACCAGCTCTTATTC
AACCAGGGCTTACTCTCGTAATCTCCCCACTTATTAGCTTGATGAAAGATCAAGTCGACCAGCTGAATATTGCCGGAATT
CCAGCAACATTTATTAACTCTACCTTAGAGGATTCCGAATCTTATCAAAGAATGCGACAGGTTGAAAATGGCGAAATCAA
GCTTCTTTTTGTAGCACCAGAGCGTTTTTCATTAGACTATTTCAATGTCTTTTTACAAAAACTTCCAATTGATTTAGTTG
CCATAGACGAAGCACACTGCATTTCACAATGGGGGCACGATTTCAGACCCAGTTATGTCGATTTTGCCTCTCATCTCCAA
TATTTACCAACAAATCCTACCGTCTTAGCCCTTACGGCCACTGCGACACCAAAAGTTGCAGATGATATTCAAAAACTTCT
TTCAATTTCCCCCAGTCATACTATTAAAACCGGTTTTCTTAGAGAAAACTTACGTTTTGAAGTAGTCAAAGGGATGGATA
AGAGAACTTTTCTTAAAAATTATCTTAAAAATCAAGAAAGTGAGGCTGCTGGAATTATCTATGCCAGCACTCGTAAAGAA
GTTGAAGAAATTTGTGAATGGCTCAACCATAATCATTTCAAAGCCGTTCGTTACCATGCTGGACTGAGTGAACAGGAACG
TCAAATGAATCAAGAACTTTTTCTCTTTGACGAAGTGCCAATAATGGTTGCCACTAATGCTTTTGGCATGGGAATCAATA
AACCAAATGTTCGATTTGTGATTCATTATGCCCTTCCCGCAACAATTGAAAGTTATTATCAAGAAGCTGGACGAGCAGGA
CGGGATGGGCTTGAATCTGATGCTATCCTCCTTTTTTCACCAAATGATTTACGAATTCGTAATTTCTTGATTGAGCAAAG
TGAAGGTGATGAAGCGCACAAGGAACATGAATACGAAAAGCTTCGACAAATGCAAGCATACACAAGTGCCGAAACCTGTT
TACAACGCTATATCTTGCAATATTTTGGTGATGAAGGTGAAGATTGTAAAAAATGTAGTAATTGTCTTGATGAAAGAGAA
CTTCTCGATATTACAATTGATGCTCAAAAAGTTCTATCTTGTGTCGTCCGAATGGGTGAACGTTTTGGTAAGACGGCCGT
AGCACAAGTTTTGATTGGTTCTAAAAATAAAAATATTGCAAAATGGAATTTTGAATCTCTATCGACTTTTGGAATTATGA
AAAACCATTCCCAAAAGACCGTAGGTGAATTAATCGATTTTCTATCTGCTGAAGGTTATTTAAACATTACATCAGGTAAA
TTCCCACTTCTCCTTCTTTCAGCCCAAGGATTAAAAGTCCTCAAAGGACAAATCAAAGTTTATCGCAAAGCTAGCTTAAT
TATTGAATCGAAAACAAAAATTTCTCATCATTTTGATGAAGAATGTTTTGCAAGTATTCGTGCACTTCGACTTGAACTAG
CCAAGGAAGAAGGCGTCCCTCCTTTCATGATTTTTTCTGATAGTGCCCTTAAAGAAATGGCTCAAGTTCTGCCAGATAGC
CCAAGTCAATTTTTACAAATTTCTGGTGTCGGACCTGTTAAACTCGAAAAATATGGAAGGCTTTTTATCGACAAAATATC
TGAATATAAAAAAAGCTGA

Domains

Predicted by InterProScan.

• DEAD/DEAH box helicase (DEAD) (19-179)

• HRDC domain (HRDC) (520-584)

• Helicase conserved C-terminal domain (Helicase_C) (214-322)

• RecQ zinc-binding (RecQ_Zn_bind) (335-396)

• RQC domain (RQC) (399-503)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recQ	Bacillus subtilis subsp. subtilis str. 168	51.278	99.155	0.508