Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HV011_RS15105 Genome accession   NZ_CP056967
Coordinates   3154836..3155450 (-) Length   204 a.a.
NCBI ID   WP_117341734.1    Uniprot ID   A0AAU7GM83
Organism   Citrobacter freundii strain RHB41-C16     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3149836..3160450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV011_RS15090 (HV011_15090) helD 3150060..3152114 (-) 2055 WP_181595641.1 DNA helicase IV -
  HV011_RS15095 (HV011_15095) - 3152240..3152686 (+) 447 WP_096757638.1 YccF domain-containing protein -
  HV011_RS15100 (HV011_15100) yccS 3152705..3154858 (+) 2154 WP_096759437.1 YccS family putative transporter -
  HV011_RS15105 (HV011_15105) sxy/tfoX 3154836..3155450 (-) 615 WP_117341734.1 TfoX/Sxy family DNA transformation protein Regulator
  HV011_RS15110 (HV011_15110) sulA 3155667..3156176 (+) 510 WP_096757640.1 SOS-induced cell division inhibitor SulA -
  HV011_RS15115 (HV011_15115) ompA 3156531..3157577 (+) 1047 WP_096759438.1 porin OmpA -
  HV011_RS15120 (HV011_15120) matP 3157676..3158128 (-) 453 WP_096757641.1 macrodomain Ter protein MatP -
  HV011_RS15125 (HV011_15125) - 3158314..3160074 (+) 1761 WP_115258918.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23257.84 Da        Isoelectric Point: 9.1904

>NTDB_id=461116 HV011_RS15105 WP_117341734.1 3154836..3155450(-) (sxy/tfoX) [Citrobacter freundii strain RHB41-C16]
MKNLSYARIYKSQEYLASLGTISYRSLFGSYSLTVGDTVFAMVADGELYLRACEQSVQYCVKHSPVWLTFMKRGRPVILN
YYQVNDALWRNHPQLVSLSRYSLDAAVKEKQTRVSQHRLRELPNISFHLETLLSEAGINDESTLRTLGAQMCWLKLLQIN
PSLTVKILYALEGAISGIHEAALPTVRRRELVEWVSSLKPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=461116 HV011_RS15105 WP_117341734.1 3154836..3155450(-) (sxy/tfoX) [Citrobacter freundii strain RHB41-C16]
ATGAAAAACCTCTCTTATGCCAGGATCTATAAATCACAAGAATATTTGGCCTCTTTAGGTACAATTAGCTACCGCTCTTT
ATTTGGCAGTTATAGCTTGACGGTGGGCGATACGGTCTTTGCAATGGTTGCCGACGGTGAGTTATACCTGCGGGCCTGTG
AGCAAAGCGTACAGTACTGTGTCAAACATTCCCCGGTCTGGTTGACGTTTATGAAGCGGGGACGTCCCGTGATACTCAAC
TATTATCAAGTTAATGATGCGCTGTGGCGAAACCATCCGCAGTTGGTGTCTTTATCACGATATTCGCTGGATGCCGCAGT
AAAAGAAAAGCAGACGCGTGTTTCGCAACACCGGTTACGGGAACTGCCGAACATTTCCTTTCATCTGGAGACCCTACTGA
GTGAAGCCGGGATTAACGATGAGAGTACATTACGCACCCTGGGTGCTCAAATGTGTTGGCTAAAGCTTTTGCAAATTAAC
CCATCGCTGACAGTGAAAATTCTTTATGCGCTTGAGGGTGCAATCAGTGGGATACATGAAGCTGCACTCCCGACGGTTCG
CCGCCGGGAGTTGGTTGAGTGGGTGAGTTCACTTAAGCCTGAACCGGGTTACTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.608

100

0.696