Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   LILO_RS08950 Genome accession   NC_020450
Coordinates   1880942..1881613 (-) Length   223 a.a.
NCBI ID   WP_003132782.1    Uniprot ID   Q9CET7
Organism   Lactococcus lactis subsp. lactis IO-1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1875942..1886613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LILO_RS08925 (lilo_1723) pheA 1876242..1877081 (-) 840 WP_014570689.1 prephenate dehydratase -
  LILO_RS08930 (lilo_1724) - 1877083..1877571 (-) 489 WP_015426915.1 shikimate kinase -
  LILO_RS08935 (lilo_1725) aroA 1877595..1878887 (-) 1293 WP_015426916.1 3-phosphoshikimate 1-carboxyvinyltransferase -
  LILO_RS08940 (lilo_1726) - 1879013..1880077 (-) 1065 WP_015426917.1 prephenate dehydrogenase -
  LILO_RS08945 (lilo_1727) - 1880080..1880955 (-) 876 WP_003132784.1 sensor histidine kinase -
  LILO_RS08950 (lilo_1728) braR 1880942..1881613 (-) 672 WP_003132782.1 response regulator transcription factor Regulator
  LILO_RS08955 (lilo_1729) - 1881616..1882680 (-) 1065 WP_015426919.1 VanZ family protein -
  LILO_RS08960 (lilo_1730) - 1882861..1884864 (-) 2004 WP_015426920.1 FtsX-like permease family protein -
  LILO_RS08965 (lilo_1731) - 1884857..1885636 (-) 780 WP_015426921.1 ABC transporter ATP-binding protein -
  LILO_RS08970 (lilo_1732) - 1885825..1886184 (-) 360 WP_042230570.1 YxeA family protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 25510.44 Da        Isoelectric Point: 4.8093

>NTDB_id=46108 LILO_RS08950 WP_003132782.1 1880942..1881613(-) (braR) [Lactococcus lactis subsp. lactis IO-1]
MTKIFIVEDDEIIVKAIKIALEKEFQVRSVSNFRAVKQEIMEFEADLVLMDIGLPFYSGFYWTNELRKLSQIPIIFISSA
SDDMNQVTAMNQGADDFVTKPFSLEILNAKIKALLRRSYSFSGIEKLEFAGYVLSENTLISTQEGEREEIELTSSENKIL
TLLFRGNGEVVTKEKILQELWQTDEFIDANTLNVKMTRLRKKLGEIGFDKHIMTKRGSGYALV

Nucleotide


Download         Length: 672 bp        

>NTDB_id=46108 LILO_RS08950 WP_003132782.1 1880942..1881613(-) (braR) [Lactococcus lactis subsp. lactis IO-1]
ATGACTAAAATATTTATTGTAGAAGATGATGAAATTATTGTGAAAGCAATTAAGATTGCCTTAGAAAAAGAATTTCAAGT
CAGAAGTGTTTCCAATTTTCGAGCAGTAAAACAAGAAATTATGGAATTTGAAGCAGATTTAGTATTAATGGATATTGGGC
TACCATTTTATAGTGGTTTTTATTGGACAAATGAATTAAGAAAGCTTTCCCAAATTCCTATTATCTTTATTTCTTCGGCG
TCGGATGACATGAATCAAGTAACCGCCATGAATCAAGGAGCTGATGATTTTGTAACCAAGCCATTTTCATTAGAAATTTT
AAATGCAAAAATAAAAGCTTTACTGCGCAGAAGTTATTCTTTTTCAGGGATTGAAAAGTTAGAATTTGCTGGTTATGTTT
TATCTGAAAATACTTTGATTTCAACTCAAGAAGGTGAACGCGAAGAAATTGAGCTAACAAGTTCTGAAAATAAAATTTTA
ACTCTTCTTTTTCGTGGAAATGGTGAAGTGGTGACCAAGGAAAAAATTTTACAAGAGTTGTGGCAAACAGATGAATTTAT
TGATGCAAATACTTTAAATGTAAAAATGACTCGTTTACGCAAAAAACTTGGTGAAATTGGCTTTGATAAGCATATTATGA
CAAAAAGAGGAAGTGGTTATGCTCTGGTTTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(148-222)

Response regulator receiver domain (Response_reg)

(4-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CET7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.441

99.552

0.413

Multiple sequence alignment