Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   DRO_RS04175 Genome accession   NZ_CP068791
Coordinates   830285..831019 (+) Length   244 a.a.
NCBI ID   WP_010887465.1    Uniprot ID   Q9RW50
Organism   Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain R1     
Function   homologous recombination; promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 825285..836019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DRO_RS04150 (DRO_0809) - 826825..827757 (-) 933 WP_010887460.1 proline dehydrogenase family protein -
  DRO_RS04155 (DRO_0810) - 827801..828517 (-) 717 WP_051618822.1 GntR family transcriptional regulator -
  DRO_RS04160 (DRO_0811) - 828582..829046 (-) 465 WP_010887462.1 MgtC/SapB family protein -
  DRO_RS04165 (DRO_0812) - 829095..829442 (-) 348 WP_027479972.1 hypothetical protein -
  DRO_RS04170 (DRO_0813) - 829704..830096 (-) 393 WP_027479971.1 hypothetical protein -
  DRO_RS04175 (DRO_0814) recO 830285..831019 (+) 735 WP_010887465.1 DNA repair protein RecO Machinery gene
  DRO_RS04180 (DRO_0815) - 831188..831586 (-) 399 WP_010887466.1 hypothetical protein -
  DRO_RS04185 (DRO_0816) - 831602..832498 (-) 897 WP_034350357.1 alpha/beta hydrolase -
  DRO_RS04190 (DRO_0817) - 832743..833483 (-) 741 WP_027479969.1 SDR family oxidoreductase -
  DRO_RS04195 (DRO_0818) ppgK 833578..834447 (+) 870 WP_233668279.1 polyphosphate--glucose phosphotransferase -
  DRO_RS04200 (DRO_0819) - 834518..835723 (+) 1206 WP_051618821.1 amidohydrolase family protein -
  DRO_RS04205 (DRO_0820) rpmE 835779..836000 (+) 222 WP_010887471.1 50S ribosomal protein L31 -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26343.46 Da        Isoelectric Point: 9.2272

>NTDB_id=461015 DRO_RS04175 WP_010887465.1 830285..831019(+) (recO) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain R1]
MRSRTANRSGIVIRRRVTPAGDIIVTLLTPQGKLKAIARGGVKGPLSSSLNLFHHVGVQVYQGPHNDLASVKQAVLEGAL
PTLAEPERYAFAHLMAEFADALFQEGEFSEQAFDLFAASLRGVAHQPDPEWVALVMSYKLLGLAGVIPQTARCARCGAPD
PEHPDPLGGQLLCSKCAALPPYPPAVLDFLRHAVRRTVRASFEQPVPSADRPALWRALEKFVTVQVGGVHSWRQLVPSGV
PVLS

Nucleotide


Download         Length: 735 bp        

>NTDB_id=461015 DRO_RS04175 WP_010887465.1 830285..831019(+) (recO) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain R1]
ATGCGCTCACGCACCGCCAACCGCAGCGGCATCGTCATCCGCCGCCGGGTGACGCCTGCCGGCGACATCATCGTCACGCT
GCTGACCCCCCAGGGCAAGCTCAAGGCCATCGCGCGTGGCGGGGTCAAGGGGCCGCTGTCGAGCAGCCTCAACCTCTTTC
ACCATGTTGGGGTGCAGGTGTACCAGGGGCCGCACAACGACCTTGCCAGCGTGAAACAGGCGGTGCTGGAGGGCGCCCTG
CCCACCCTGGCCGAGCCTGAGCGCTACGCCTTCGCGCACCTGATGGCCGAATTTGCCGACGCGCTGTTTCAGGAAGGCGA
GTTCTCCGAGCAGGCCTTCGACCTCTTCGCCGCCTCGCTGCGCGGCGTGGCGCACCAGCCCGACCCCGAGTGGGTGGCGC
TCGTCATGAGCTACAAGCTGCTCGGACTGGCCGGGGTGATCCCCCAGACCGCTCGCTGCGCCCGTTGCGGCGCGCCCGAC
CCTGAGCACCCCGACCCCCTCGGCGGACAACTGCTGTGCAGCAAGTGCGCGGCCCTCCCGCCCTACCCGCCCGCCGTCCT
CGACTTCCTGCGCCACGCCGTGCGGCGCACCGTCCGCGCCAGCTTTGAGCAGCCGGTGCCGAGTGCCGACCGCCCCGCGC
TGTGGAGAGCGCTGGAAAAGTTCGTCACGGTGCAGGTCGGCGGCGTCCACAGCTGGCGGCAACTCGTCCCAAGCGGCGTG
CCGGTGCTGAGCTAG

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(86-228)

Recombination protein O N terminal (RecO_N)

(6-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 1U5K
  PDB 1W3S
  PDB 2V1C
  PDB 4JCV

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

100

100

1