Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   JMJ48_RS05920 Genome accession   NZ_CP068761
Coordinates   1142421..1145354 (+) Length   977 a.a.
NCBI ID   WP_202838259.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 20181204     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1137421..1150354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMJ48_RS05905 (JMJ48_05905) - 1137903..1138493 (-) 591 WP_003689643.1 aminodeoxychorismate/anthranilate synthase component II -
  JMJ48_RS05910 (JMJ48_05910) znuD 1138904..1141180 (+) 2277 WP_014580101.1 TonB-dependent zinc receptor ZnuD -
  JMJ48_RS05915 (JMJ48_05915) - 1141572..1142351 (-) 780 WP_003689647.1 phosphatidylserine decarboxylase -
  JMJ48_RS05920 (JMJ48_05920) uvrA 1142421..1145354 (+) 2934 WP_202838259.1 excinuclease ABC subunit UvrA Machinery gene
  JMJ48_RS05925 (JMJ48_05925) - 1145372..1146013 (+) 642 WP_003689649.1 Eco29kI family restriction endonuclease -
  JMJ48_RS05930 (JMJ48_05930) - 1146017..1147150 (+) 1134 WP_003689650.1 DNA cytosine methyltransferase -
  JMJ48_RS05935 (JMJ48_05935) - 1147458..1147646 (+) 189 WP_014580099.1 transposase -
  JMJ48_RS05940 (JMJ48_05940) - 1147643..1148296 (-) 654 WP_202838260.1 IS1595 family transposase -
  JMJ48_RS05945 (JMJ48_05945) - 1148438..1150072 (-) 1635 WP_003689652.1 CTP synthase -

Sequence

Protein


Download         Length: 977 a.a.        Molecular weight: 108708.89 Da        Isoelectric Point: 7.2666

>NTDB_id=460974 JMJ48_RS05920 WP_202838259.1 1142421..1145354(+) (uvrA) [Neisseria gonorrhoeae strain 20181204]
MPSERGFRRHPRKCYNIGFPLFFQAASIMCNHHPRHSHDNDTIRICGARTHNLKNIDLDIPRHKLVVVTGLSGSGKSSLA
FDTLYAEGQRRYVESLSAYARQFLQMMDKPDVDLIEGLSPAISIEQKSTSHNPRSTVGTVTEIHDYLRLLYARVGTPYCP
EHNLSLSSQTVSQMVDAVLKLPEDTRVMILGPAVRERKGEFVDFFADLQAQGFARVRVDGEVYQLDEVPKLEKNIKHNID
VVIDRVKVKADIKQRLAESFETALRHGNERALAMEMDSGEEHWFSARFACPVCSYSLPELEPRLFSFNNPMGSCPTCDGL
GNTNFFDPEKVVAHPELSLATGAIDGWDKRNQFYFQMIQSLAHHYKFDVNVAWETLPEKVKKVVLHGSGKEVIDFTYLSE
RGTTFNRSHAFEGIIPNLERRYRETDSETVREKLREYQNHRACPSCGGARLRKEARYVYVGGEPLHEVSAWPLTKTHRFF
ETLDLDGNKKQIAEKILKEITERLGFLINVGLDYLNLSRSAETLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRD
NDRLLATLKRLRDLGNSVIVVEHDEDAIREADFVVDMGPGAGEHGGNVLIADTPENVAKCEKSVTGQYLGGKKSIAVPSE
RTPVNPGRMLVLKGARGNNLKNVTLELPLGLITCITGVSGSGKSTLINDTLAKITARELNRAQEEPAPYDDIRGLEHLDK
VINVDQSPIGRTPRSNPATYTGLFTPIRELFAGVPLSRERGYNVGRFSFNVKGGRCEACQGDGVIKVEMHFLPDVYVPCE
VCHGKRYNRETLEIQYKGKNISQVLDMTVEEAREFFDAVPTVSRKLQTLMDVGLGYIRLGQSATTLSGGEAQRVKLALEL
SKRDTGRTLYILDEPTTGLHFADIALLLEVIGRLKGKGNSIVIIEHNLDVIKTADWIVDLGPEGGDGGGKVIAKGSPEEV
AKVKGSYTGKYLKVVLK

Nucleotide


Download         Length: 2934 bp        

>NTDB_id=460974 JMJ48_RS05920 WP_202838259.1 1142421..1145354(+) (uvrA) [Neisseria gonorrhoeae strain 20181204]
ATGCCGTCTGAACGCGGCTTCAGACGGCATCCGAGAAAGTGCTACAATATCGGTTTTCCTTTATTTTTTCAGGCGGCATC
CATTATGTGCAACCATCATCCCCGACATTCGCACGACAACGACACCATCCGCATTTGCGGCGCGCGCACGCATAATTTGA
AAAACATCGATTTGGACATTCCCCGCCACAAGCTCGTGGTGGTAACAGGATTGTCAGGCAGCGGCAAATCATCGCTGGCG
TTTGATACTTTATATGCCGAAGGGCAGCGGCGTTATGTCGAGAGCCTGTCTGCCTATGCGCGGCAGTTTTTGCAGATGAT
GGACAAACCCGATGTCGATTTGATTGAAGGCCTGTCGCCTGCGATTTCCATCGAGCAGAAATCCACCAGCCACAATCCGC
GTTCCACCGTCGGCACGGTAACGGAAATCCACGACTACCTGCGCCTTTTATACGCCCGTGTCGGCACACCGTATTGCCCC
GAACACAATTTGTCGCTGTCGAGCCAAACCGTGTCGCAGATGGTTGATGCCGTGTTGAAGCTGCCGGAAGATACGCGCGT
GATGATTCTGGGGCCGGCGGTGCGCGAGCGTAAAGGCGAATTTGTCGATTTCTTTGCCGACTTGCAGGCGCAAGGCTTTG
CCCGTGTGCGCGTGGACGGCGAAGTCTATCAGCTTGACGAAGTACCGAAGCTGGAAAAAAACATCAAACACAATATCGAC
GTCGTCATCGACCGCGTGAAAGTGAAAGCCGACATCAAACAACGACTGGCGGAAAGTTTTGAAACCGCGCTGCGCCACGG
CAACGAGCGCGCGCTGGCGATGGAAATGGACAGCGGCGAAGAACATTGGTTTTCCGCGCGTTTTGCCTGCCCCGTGTGTT
CGTACAGCCTGCCCGAATTGGAACCGCGCCTCTTTTCGTTCAACAACCCGATGGGTTCCTGCCCGACTTGCGACGGCTTG
GGCAACACCAATTTCTTTGACCCCGAAAAAGTGGTCGCCCACCCTGAATTGTCATTGGCAACGGGCGCGATTGACGGCTG
GGACAAGCGCAACCAGTTCTATTTCCAAATGATTCAATCGCTGGCGCATCATTATAAATTTGATGTCAACGTCGCTTGGG
AAACTTTGCCTGAAAAAGTCAAAAAAGTCGTGTTGCACGGCTCGGGCAAAGAAGTCATTGATTTCACCTACCTGTCCGAA
CGCGGCACCACCTTCAACCGCAGCCACGCCTTCGAGGGCATCATCCCCAATCTCGAACGCCGCTACCGCGAAACCGACAG
CGAAACCGTGCGCGAAAAACTGCGCGAGTACCAAAATCACCGTGCCTGCCCGAGCTGCGGCGGCGCACGTTTGCGCAAAG
AAGCACGCTACGTTTACGTCGGCGGCGAACCGTTGCACGAAGTCTCCGCCTGGCCGCTGACCAAAACCCACCGATTCTTC
GAAACGCTGGATTTGGACGGCAACAAAAAACAGATCGCCGAAAAAATCCTCAAAGAAATCACCGAGCGGCTCGGCTTCTT
GATTAACGTCGGACTGGATTACCTGAATCTAAGCCGTTCCGCCGAAACCCTTTCCGGCGGCGAAGCCCAGCGCATCCGCC
TTGCCAGCCAAATCGGCAGCGGCCTGACCGGCGTGATGTACGTTTTGGACGAACCCTCCATCGGCCTGCACCAGCGCGAC
AACGACCGCCTGCTCGCCACCCTCAAACGCCTGCGCGATTTGGGCAACAGCGTAATTGTGGTCGAACACGACGAAGACGC
CATCCGCGAAGCCGATTTCGTCGTCGATATGGGCCCCGGCGCGGGCGAACACGGCGGCAACGTACTGATTGCCGACACAC
CCGAAAATGTCGCCAAATGCGAAAAATCCGTTACCGGACAATACCTCGGCGGTAAAAAATCCATTGCCGTGCCGTCTGAA
CGCACGCCCGTCAATCCCGGCCGAATGCTCGTCCTCAAAGGCGCGCGCGGCAACAACCTCAAAAACGTAACCCTCGAGTT
GCCGCTTGGTTTGATTACCTGCATCACCGGCGTATCCGGCAGCGGCAAATCCACCCTGATTAACGACACCCTCGCCAAAA
TCACCGCCCGCGAACTCAACCGCGCCCAAGAAGAGCCCGCCCCATACGACGACATCCGCGGCCTCGAACACCTCGACAAA
GTCATCAACGTCGACCAATCCCCCATCGGCCGCACCCCGCGCTCCAACCCCGCCACCTACACCGGCCTGTTCACCCCCAT
CCGCGAACTCTTCGCCGGCGTACCCCTCTCGCGCGAACGCGGCTACAACGTCGGCAGATTCTCCTTCAACGTCAAAGGCG
GCCGCTGCGAAGCCTGCCAAGGCGACGGCGTAATCAAAGTCGAAATGCACTTCCTGCCCGACGTGTACGTCCCCTGCGAA
GTCTGCCACGGCAAACGCTACAACCGCGAAACCCTCGAAATCCAATACAAAGGCAAAAACATCAGCCAAGTCCTCGACAT
GACGGTCGAAGAAGCCCGCGAATTTTTCGACGCCGTCCCCACCGTATCGCGCAAACTGCAAACCCTGATGGACGTAGGTC
TCGGCTACATCCGCCTCGGCCAATCCGCCACCACCCTCTCCGGCGGCGAAGCCCAGCGCGTCAAACTCGCCTTGGAACTC
TCCAAACGCGACACCGGCAGAACGCTCTACATCCTCGACGAACCCACCACCGGCCTGCACTTCGCCGACATCGCCCTGCT
GCTGGAAGTCATAGGCCGTCTGAAAGGCAAAGGCAACTCGATTGTGATTATCGAGCATAATCTGGATGTAATTAAAACCG
CGGATTGGATTGTGGACTTAGGGCCGGAAGGCGGCGATGGTGGGGGTAAGGTTATCGCGAAAGGTAGCCCTGAGGAAGTG
GCGAAGGTTAAGGGGAGTTATACCGGGAAGTATTTGAAAGTGGTTTTGAAGTAA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(169-273)

UvrA DNA-binding domain (UvrA_DNA-bind)

(327-435)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

59.338

95.906

0.569
  uvrA Streptococcus pneumoniae TIGR4

59.338

95.906

0.569
  uvrA Streptococcus pneumoniae D39

59.338

95.906

0.569