Detailed information NTG0046096

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: LILO_RS07525
• Genome accession: NC_020450
• Coordinates: 1598865..1601468 (-)
• Length: 867 a.a.
• NCBI ID: WP_015426695.1
• Uniprot ID: -
• Organism: Lactococcus lactis subsp. lactis IO-1
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1593865..1606468

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LILO_RS07505 (lilo_1449)	-	1594271..1595710 (-)	1440	WP_042230468.1	YecA family protein	-
LILO_RS07510 (lilo_1450)	-	1595849..1596583 (-)	735	WP_015426691.1	Fic family protein	-
LILO_RS07515	fic	1596588..1597190 (-)	603	WP_042230471.1	protein adenylyltransferase Fic	-
LILO_RS07520 (lilo_1453)	-	1597190..1598752 (-)	1563	WP_015426694.1	type I restriction-modification system subunit M	-
LILO_RS07525 (lilo_1454)	clpC	1598865..1601468 (-)	2604	WP_015426695.1	ATP-dependent chaperone ClpB	Regulator
LILO_RS07530 (lilo_1455)	-	1601657..1602463 (-)	807	WP_015426696.1	hypothetical protein	-
LILO_RS07535 (lilo_1456)	-	1602670..1604016 (+)	1347	WP_015426697.1	hypothetical protein	-
LILO_RS07540 (lilo_1457)	-	1604044..1604667 (-)	624	WP_015426698.1	NAD-dependent epimerase/dehydratase family protein	-
LILO_RS07545 (lilo_1458)	purF	1604777..1606240 (-)	1464	WP_015426699.1	amidophosphoribosyltransferase	-

Sequence

Protein

• Length: 867 a.a.
• Molecular weight: 97385.23 Da
• Isoelectric Point: 4.8661

>NTDB_id=46096 LILO_RS07525 WP_015426695.1 1598865..1601468(-) (clpC) [Lactococcus lactis subsp. lactis IO-1]
MDIEKMTTTMQEALGSAQQIAQVRHHQVIEVPHLWRIFVQPNSFGANFYKDLGIDLDDFTNLIEKEIDKINSVEGSNITY
GQNLSPDLFQVFTEADKIAQKMGDEYLSTEIILLALFELKQNPLTSYLVSHGLTKAKVQAAIEKLRGGDKVTSQNAEETY
KALEKYGVDLVAQVKSGKQDPVIGRDEEIRDVIRVLSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVRKDVPENLKDKTIF
SLDMGALIAGAKYRGEFEERLKAVLNEVKKSDGQIILFIDELHTIVGAGKTEGSMDAGNLLKPMLARGELHLIGATTLDE
YRKYMETDKALERRFQKVLVTEPTVEDTISILRGLKERFEIHHGVTIHDNALVAAATLSNRYITDRFLPDKAIDLVDEAS
ATIRVEMNSLPTELDQANRRLMQLEIEEAALKKERDDASKKRLEIIRGEIAELREENNQLKAQWEAEKKEVGNISEKRNE
LEHARHELEEAQNEGNLEKAAALRYGKIPEIEKELKAIEEKAKSDDLSLVQESVTEEQIAEVVGRMTGIPITKLVEGERE
KLLHLPETLHQRVVGQDEAVEAVSDAIIRARAGIQDPNRPLGSFLFLGPTGVGKTELAKALAENLFDSEEHMVRIDMSEY
MEKHSVSRLVGAPPGYVGYDEGGQLTESVRRNPYTIILLDEIEKAHPDVFNILLQVLDDGRLTDSKGVLVDFKNTVLIMT
SNVGSQYLLDNVGENGEISEETTENVMAQLRAHFKPEFLNRIDDTILFKPLALEDIKNIIVKMTSQLSHRLEEMDVQLEL
SEEVKVWIAENAYEPAYGARPLKRYLTKVIENPLAKLIIGGKIPPKSKVIVRLIDNKIDFDIQKIAE

Nucleotide

• Length: 2604 bp

>NTDB_id=46096 LILO_RS07525 WP_015426695.1 1598865..1601468(-) (clpC) [Lactococcus lactis subsp. lactis IO-1]
ATGGACATCGAAAAAATGACAACAACGATGCAAGAAGCACTTGGTTCAGCGCAACAAATTGCGCAAGTTCGTCATCACCA
AGTGATTGAAGTTCCACATTTATGGCGAATTTTTGTTCAACCTAATAGTTTTGGGGCGAACTTTTATAAAGATTTAGGGA
TTGACCTAGATGACTTTACAAATTTAATTGAAAAAGAAATTGACAAAATTAATTCAGTAGAAGGTTCAAATATTACTTAT
GGTCAAAACCTAAGTCCAGATTTGTTCCAAGTATTTACTGAAGCAGACAAAATTGCGCAAAAAATGGGCGATGAGTACCT
ATCAACTGAGATTATTCTCCTTGCCCTCTTTGAATTAAAACAAAATCCATTGACCAGTTATTTGGTCAGCCATGGACTAA
CAAAAGCAAAAGTGCAAGCTGCGATTGAAAAATTACGCGGAGGTGATAAAGTGACCAGTCAAAATGCAGAAGAAACATAC
AAAGCACTTGAAAAATATGGGGTAGATCTCGTTGCTCAAGTTAAATCAGGTAAACAAGATCCTGTCATTGGACGTGATGA
AGAAATTCGTGATGTCATTCGAGTGCTTTCTCGTAAAACAAAAAATAACCCCGTTCTTATTGGTGAACCTGGGGTTGGTA
AAACAGCCATTGTTGAAGGATTGGCACAAAGGATTGTCAGAAAAGACGTTCCTGAAAATCTGAAAGATAAAACCATCTTT
TCACTGGATATGGGTGCCCTGATTGCAGGCGCGAAATATCGTGGTGAATTTGAAGAACGTTTGAAAGCAGTCCTTAATGA
AGTGAAAAAATCAGATGGACAAATTATCCTCTTTATTGATGAACTTCATACGATTGTTGGTGCAGGTAAAACAGAAGGTT
CAATGGACGCTGGGAACCTTTTAAAACCAATGCTTGCACGTGGTGAACTCCATTTGATTGGGGCAACTACCTTGGATGAA
TATCGTAAATACATGGAAACAGATAAAGCACTTGAACGTCGTTTCCAAAAGGTATTGGTTACTGAACCTACTGTTGAAGA
TACAATTTCAATCTTGCGTGGTCTAAAAGAACGTTTTGAAATTCACCATGGAGTGACCATTCATGATAATGCTTTAGTCG
CAGCAGCAACCCTTTCAAATCGTTATATTACTGACCGATTTTTACCAGATAAAGCCATTGACTTGGTTGATGAAGCCAGT
GCAACAATTCGTGTAGAAATGAATTCACTCCCAACTGAACTTGACCAAGCCAATCGTCGCTTGATGCAATTAGAAATTGA
AGAAGCGGCCCTCAAAAAAGAACGAGATGATGCTTCTAAGAAACGTCTTGAAATTATACGTGGTGAAATTGCTGAACTTC
GAGAAGAAAATAATCAACTCAAAGCTCAATGGGAAGCTGAGAAAAAAGAAGTGGGCAATATTTCTGAAAAACGAAATGAA
TTAGAACATGCTCGCCACGAATTGGAAGAAGCTCAAAATGAAGGAAACTTAGAAAAAGCAGCAGCCCTTCGTTATGGTAA
AATTCCTGAAATTGAAAAAGAACTCAAAGCTATTGAAGAAAAAGCAAAATCAGATGATTTATCCTTAGTTCAAGAATCAG
TCACTGAAGAACAAATCGCTGAAGTGGTTGGACGCATGACAGGTATTCCAATTACCAAATTGGTTGAAGGTGAACGTGAA
AAATTGCTTCACTTACCAGAAACACTGCATCAAAGGGTTGTCGGACAAGATGAAGCTGTTGAAGCCGTATCTGATGCCAT
TATCCGTGCGCGTGCAGGAATTCAAGACCCTAACCGTCCACTTGGCTCATTCCTCTTCCTTGGACCAACTGGGGTAGGTA
AGACGGAGCTTGCGAAAGCTTTGGCTGAAAATCTCTTTGATTCAGAAGAACATATGGTTCGGATTGACATGAGTGAATAT
ATGGAAAAACACTCAGTTTCTCGGTTAGTCGGAGCCCCTCCAGGATATGTCGGCTACGATGAAGGAGGCCAATTGACTGA
ATCCGTTCGTCGTAATCCTTATACAATCATCTTGCTTGATGAAATCGAAAAAGCACATCCAGATGTCTTCAATATCTTGT
TGCAAGTTTTGGATGACGGCCGTTTGACTGATTCTAAAGGTGTTCTCGTTGACTTTAAGAACACAGTGTTGATTATGACT
TCAAATGTCGGTTCTCAATATTTGCTTGATAATGTTGGAGAAAATGGTGAAATTTCGGAAGAAACAACTGAAAACGTGAT
GGCTCAACTTCGGGCACATTTCAAACCAGAATTTCTAAATCGGATTGATGATACCATTCTTTTCAAACCATTGGCACTTG
AGGATATTAAGAATATTATCGTTAAAATGACTAGCCAACTTTCACATCGTCTTGAAGAAATGGACGTTCAACTTGAGTTG
AGTGAAGAAGTAAAAGTTTGGATTGCCGAAAATGCTTACGAACCAGCTTATGGTGCACGTCCACTCAAACGTTATTTGAC
AAAAGTCATCGAAAATCCATTAGCTAAGCTGATTATCGGAGGAAAAATTCCGCCAAAATCAAAAGTTATTGTAAGGCTTA
TAGATAACAAGATTGACTTTGATATTCAAAAAATTGCTGAATAA

Domains

Predicted by InterProScan.

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-67)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (95-147)

• AAA domain (Cdc48 subfamily) (AAA_2) (599-764)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (771-851)

• AAA lid domain (AAA_lid_9) (344-444)

• ATPase family associated with various cellular activities (AAA) (AAA) (205-339)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	45.224	100	0.453
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	40.611	100	0.414